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PDBsum entry 1v0m
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Ligand/metal interactions
PDB id
1v0m
Ligand highlighted
XDN-XYP
Ligands
XDN-XYP
XDN 1303(A) to XYP 1304(A)
IMD
IMD 1305(A)
Ligand
XDN-XYP
XDN
-
Piperidine-3,4,5-Triol [Xylose-Derived 1-Deoxy-Nojirimycin]
Formula:
C
5
H
11
NO
3
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
XDN 1303(A)
9
9
0
0
Complete
Chiral checks - OK
XYP 1304(A)
10
10
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand XDN-XYP
List of
interactions
XDN 1303(A) to XYP 1304(A)
