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PDBsum entry 1ub3
Go to PDB code:
Ligand/metal interactions
PDB id
1ub3
4 instances of ligand highlighted
HPD
Ligands
HPD
×4
HPD 801(A)
Ligand
HPD
-
1-Hydroxy-Pentane-3,4-Diol-5-Phosphate
[Open form of 2'-Deoxy-Ribofuranose-5'-Phosphate]
Formula:
C
5
H
13
O
7
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HPD 801(A)
13
13
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand corresponds to this enzyme's reactant 2-deoxy-D-ribose 5-phosphate
LIGPLOT
of interactions involving ligand HPD
List of
interactions
HPD 801(A)
also representing 3 other equivalent ligands:
HPD 802(B)
HPD 803(C)
HPD 804(D)
