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PDBsum entry 1qqd
Go to PDB code:
Ligand/metal interactions
PDB id
1qqd
Ligand highlighted
GLN-TYR-ASP-ASP-
ALA-VAL-TYR-LYS-
LEU
Ligands
GLN-TYR-ASP-ASP-
ALA-VAL-TYR-LYS-
LEU
GLN 1(C) to LEU 9(C)
Ligand
GLN-TYR-ASP-ASP-ALA-VAL-TYR-LYS-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLN 1(C)
10
10
1
1
Complete
Chiral checks - OK
TYR 2(C)
13
13
1
1
Complete
Chiral checks - OK
ASP 3(C)
9
9
1
1
Complete
Chiral checks - OK
ASP 4(C)
9
9
1
1
Complete
Chiral checks - OK
ALA 5(C)
6
-
-
-
Residue too small to validate
VAL 6(C)
8
8
1
1
Complete
Chiral checks - OK
TYR 7(C)
13
13
1
1
Complete
Chiral checks - OK
LYS 8(C)
10
10
1
1
Complete
Chiral checks - OK
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLN 1(C)
-
0
TYR 2(C)
-
0
ASP 3(C)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
ASP 4(C)
OD2: OD1
|
OD1: OD2
2
ALA 5(C)
-
0
VAL 6(C)
-
0
TYR 7(C)
-
0
LYS 8(C)
O: OXT
1
LEU 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GLN-TYR-ASP-ASP-ALA-VAL-TYR-LYS-LEU
List of
interactions
GLN 1(C) to LEU 9(C)
