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PDBsum entry 1qo3
Go to PDB code:
Ligand/metal interactions
PDB id
1qo3
Ligand highlighted
ARG-GLY-PRO-GLY-
ARG-ALA-PHE-VAL-
THR-ILE
Ligands
ARG-GLY-PRO-GLY-
ARG-ALA-PHE-VAL-
THR-ILE
ARG 1(P) to ILE 10(P)
EDO
×3
EDO 1276(A)
EDO 1277(A)
EDO 1278(A)
Ligand
ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(P)
12
12
1
1
Complete
Chiral checks - OK
GLY 2(P)
5
-
-
-
Residue too small to validate
PRO 3(P)
8
8
1
1
Complete
Chiral checks - OK
GLY 4(P)
5
-
-
-
Residue too small to validate
ARG 5(P)
12
12
1
1
Complete
Chiral checks - OK
ALA 6(P)
6
-
-
-
Residue too small to validate
PHE 7(P)
12
12
1
1
Complete
Chiral checks - OK
VAL 8(P)
8
8
1
1
Complete
Chiral checks - OK
THR 9(P)
8
8
1
1
Complete
Chiral checks - OK
ILE 10(P)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(P)
-
0
GLY 2(P)
-
0
PRO 3(P)
-
0
GLY 4(P)
-
0
ARG 5(P)
-
0
ALA 6(P)
-
0
PHE 7(P)
O: OXT
1
VAL 8(P)
-
0
THR 9(P)
-
0
ILE 10(P)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE
List of
interactions
ARG 1(P) to ILE 10(P)
