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PDBsum entry 1qdc
Go to PDB code:
Ligand/metal interactions
PDB id
1qdc
4 instances of ligand highlighted
MMA-MAN
Ligands
MMA-MAN
×4
MMA 1(E) to MAN 2(E)
Metals
_CL
CL 242(A)
_CA
×4
CA 244(B)
CA 246(C)
CA 248(D)
_MN
×4
MN 240(A)
Ligand
MMA-MAN
MMA
-
Methyl alpha-D-Mannopyranoside [O1-Methyl-Mannose; methyl alpha-D-Mannoside; methyl d- Mannoside; methyl mannoside]
Formula:
C
7
H
14
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MMA 1(E)
13
13
0
0
Complete
Chiral checks - OK
MAN 2(E)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MMA-MAN
List of
interactions
MMA 1(E) to MAN 2(E)
also representing 3 other equivalent ligands:
MMA 1(F) to MAN 2(F)
MMA 1(G) to MAN 2(G)
MMA 1(H) to MAN 2(H)
_CL
_CA
×4
