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PDBsum entry 1q1a
Go to PDB code:
Ligand/metal interactions
PDB id
1q1a
Ligand highlighted
LYS-GLY-GLY-ALA-
ALY-ARG-HIS-ARG-
LYS-ILE
Ligands
LYS-GLY-GLY-ALA-
ALY-ARG-HIS-ARG-
LYS-ILE
LYS 349(B) to ILE 358(B)
OAD
OAD 1001(A)
Metals
_ZN
ZN 701(A)
Ligand
LYS-GLY-GLY-ALA-ALY-ARG-HIS-ARG-LYS-ILE
-
N(6)-Acetyllysine
Formula:
C
8
H
16
N
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 349(B)
10
10
1
1
Complete
Chiral checks - OK
GLY 350(B)
5
-
-
-
Residue too small to validate
GLY 351(B)
5
-
-
-
Residue too small to validate
ALA 352(B)
6
-
-
-
Residue too small to validate
ALY 353(B)
13
13
1
1
Complete
Chiral checks - OK
ARG 354(B)
12
12
1
1
Complete
Chiral checks - OK
HIS 355(B)
11
11
1
1
Complete
Chiral checks - OK
ARG 356(B)
12
12
1
1
Complete
Chiral checks - OK
LYS 357(B)
10
10
1
1
Complete
Chiral checks - OK
ILE 358(B)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LYS 349(B)
O: OXT
1
GLY 350(B)
-
0
GLY 351(B)
-
0
ALA 352(B)
-
0
ALY 353(B)
-
0
ARG 354(B)
O: OXT
1
HIS 355(B)
-
0
ARG 356(B)
-
0
LYS 357(B)
-
0
ILE 358(B)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product nicotinamide with similarity 61.54%
LIGPLOT
of interactions involving ligand LYS-GLY-GLY-ALA-ALY-ARG-HIS-ARG-LYS-ILE
List of
interactions
LYS 349(B) to ILE 358(B)
_ZN
