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PDBsum entry 1j10
Go to PDB code:
Ligand/metal interactions
PDB id
1j10
7 instances of ligand highlighted
XYP-GLC-GLC
Ligands
XYP-GLC-GLC
×7
XYP 1(E) to GLC 3(E)
XYP 1(F) to GLC 3(F)
XYS-GLC-GLC
XYS 1(I) to GLC 3(I)
Metals
_CA
×4
CA 701(A)
Ligand
XYP-GLC-GLC
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
XYP 1(E)
10
10
0
0
Complete
Chiral checks - OK
GLC 2(E)
12
12
1
0
Complete
Chiral checks - OK
GLC 3(E)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand XYP-GLC-GLC
List of
interactions
XYP 1(E) to GLC 3(E)
also representing 2 other equivalent ligands:
XYP 1(G) to GLC 3(G)
XYP 1(K) to GLC 3(K)
_CA
×4
