PDBsum entry 1j0d

Ligand/metal interactions

PDB id

1j0d


	4 instances of ligand highlighted
	5PA

Ligands

5PA ×4

5PA 1401(A)

Ligand 5PA - N-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-Y-
Lmethyl]-1-Amino-Cyclopropanecarboxylic acid
[N-Pyridoxyl-1-Amino-Cyclopropanecarboxylic acid-5-
Monophosphate]
Formula: C₁₂H₁₇N₂O₇P

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
5PA 1401(A)	22	22	0	0	Complete		Chiral checks - OK

Advanced Analysis

Residue	Name Mismatches	Count
5PA 1401(A)	O3P: O1P\|O1P: O3P	2

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's cofactor pyridoxal 5'-phosphate with similarity 65.22%

LIGPLOT of interactions involving ligand 5PA

List of
interactions

5PA 1401(A)

also representing 3 other equivalent ligands:
5PA 1501(B)
5PA 1601(C)
5PA 1701(D)