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PDBsum entry 1im3
Go to PDB code:
Ligand/metal interactions
PDB id
1im3
4 instances of ligand highlighted
LEU-LEU-PHE-GLY-
TYR-PRO-VAL-TYR-
VAL
Ligands
LEU-LEU-PHE-GLY-
TYR-PRO-VAL-TYR-
VAL
×4
LEU 1(C) to VAL 9(C)
Ligand
LEU-LEU-PHE-GLY-TYR-PRO-VAL-TYR-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
PHE 3(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 4(C)
5
-
-
-
Residue too small to validate
TYR 5(C)
13
13
1
1
Complete
Chiral checks - OK
PRO 6(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 7(C)
8
8
1
1
Complete
Chiral checks - OK
TYR 8(C)
13
13
1
1
Complete
Chiral checks - OK
VAL 9(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
LEU 2(C)
O: OXT
1
PHE 3(C)
-
0
GLY 4(C)
-
0
TYR 5(C)
O: OXT
1
PRO 6(C)
-
0
VAL 7(C)
-
0
TYR 8(C)
O: OXT
1
VAL 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-LEU-PHE-GLY-TYR-PRO-VAL-TYR-VAL
List of
interactions
LEU 1(C) to VAL 9(C)
also representing 3 other equivalent ligands:
LEU 1(G) to VAL 9(G)
LEU 1(K) to VAL 9(K)
LEU 1(O) to VAL 9(O)
