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PDBsum entry 1hm2
Go to PDB code:
Ligand/metal interactions
PDB id
1hm2
Ligand highlighted
MAN-GCU-XYP-MXY-
RAM
Ligands
MAN-GCU-XYP-MXY-
RAM
MAN 1(B) to RAM 5(B)
MAN-GCU-RAM
MAN 1(C) to RAM 3(C)
ASG-IDR-ASG-IDR
ASG 1(D) to IDR 4(D)
Metals
_CA
CA 1801(A)
Ligand
MAN-GCU-XYP-MXY-RAM
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
GCU
-
Alpha-D-Glucopyranuronic acid [Alpha-D-Glucuronic acid; d-Glucuronic acid; glucuronic acid]
Formula:
C
6
H
10
O
7
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
MXY
-
2-O-Methyl-Beta-L-Fucopyranose [2-O-Methyl fucose; 2-O-Methyl-Beta-L-Fucose; 2-O- Methyl-L-Fucose; 2-O-Methyl-Fucose]
Formula:
C
7
H
14
O
5
RAM
-
Alpha-L-Rhamnopyranose [Alpha-L-Rhamnose; 6-Deoxy-Alpha-L-Mannopyranose; l- Rhamnose; rhamnose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MAN 1(B)
12
12
1
0
0
0
0
0
0
0
GCU 2(B)
13
13
1
0
0
0
0
0
0
0
XYP 3(B)
10
10
1
0
0
0
0
0
0
0
MXY 4(B)
12
12
1
0
0
0
0
0
1
0
RAM 5(B)
11
11
1
0
0
0
0
0
1
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MAN-GCU-XYP-MXY-RAM
List of
interactions
MAN 1(B) to RAM 5(B)
_CA
