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PDBsum entry 1e0x
Go to PDB code:
Ligand/metal interactions
PDB id
1e0x
2 instances of ligand highlighted
X2F-XYP
Ligands
X2F-XYP
×2
X2F 1(C) to XYP 2(C)
GOL
×3
GOL 401(A)
GOL 402(A)
Ligand
X2F-XYP
X2F
-
2-Deoxy-2-Fluoro-Alpha-D-Xylopyranose [2-Deoxy-2-Fluoro xylopyranose; 2-Deoxy-2-Fluoro-Alpha- D-Xylose; 2-Deoxy-2-Fluoro-D-Xylose; 2-Deoxy-2-Fluoro- Xylose]
Formula:
C
5
H
9
FO
4
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
X2F 1(C)
10
10
1
0
Complete
Chiral checks - OK
XYP 2(C)
10
10
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand X2F-XYP
List of
interactions
X2F 1(C) to XYP 2(C)
(also representing equivalent ligand X2F 1(D) to XYP 2(D) )
