Sequence alignment between 9itk(A) and UniProt seq A9WGS6 (ATPA_CHLAA):

A9WGS6 (ATPA_CHLAA): ATP synthase subunit alpha from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
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         ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+--
UniProt: MTTITEELIARLKQGITSGVDLQPRQVNVGTVIAVGDGVARLSGLDQVVASEIVEFPPKAGRNESIYGIALNLEQDSVAAIILGDDETIEEGDMVTSTGRVISVPVGQGLLGRVVNPLGQPIDGKGPIVYEKTRPIERIAPGVITRKSVDTPVQTGIIAIDALIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGQGMVCIYVAIGQRRAQVAQVVGTLERFGAMEYTIVVSATASESAALQYIAPYAGCAMGEEIMENGVMLNGQLVKDALIVYDDLSKHAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARLNEEYGGGSLTALPVIETQANDVSAYIPTNVISITDGQIYLESDLFNAGQRPALNVGISVSRVGGAAQTRAMRAVAGKLKGELAQFRDLAAFAQFASDLDATTKAQIERGQRLQELLKQPQYQPLPVEDQVAVLYAATNNYLDDVPVPLITKWRDDFLAFLRTAHPEVRKLIYDNRLDRKFPTPEVKEALEAAIKEFKATSNYS
PDB seq: --------------------------VNVGTVIAVGDGVARLSGLDQVVASEIVEFPPKAGRNESIYGIALNLEQDSVAAIILGDDETIEEGDMVTSTGRVISVPVGQGLLGRVVNPLGQPIDGKGPIVYEKTRPIERIAPGVITRKSVDTPVQTGIIAIDALIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGQGMVCIYVAIGQRRAQVAQVVGTLERFGAMEYTIVVSATASESAALQYIAPYAGCAMGEEIMENGVMLNGQLVKDALIVYDDLSKHAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARLNEEYGGGSLTALPVIETQANDVSAYIPTNVISITDGQIYLESDLFNAGQRPALNVGISVSRVGGAAQTRAMRAVAGKLKGELAQFRDLAAFAQFASDLDATTKAQIERGQRLQELLKQPQYQPLPVEDQVAVLYAATNNYLDDVPVPLITKWRDDFLAFLRTAHPEVRKLIYDNRLDRKFPTPEVKEALEAAIKEFKATS---
                                   ---+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+---------   
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