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PDB code
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Protein
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Nmr structure of the r3h domain from poly(a)-specific ribonuclease
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Source: Mus musculus. House mouse. Organism_taxid: 10090. Gene: riken cdna 1200003i18. Other_details: cell-free protein synthesis
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Chain:
A
(87 residues)
CATH domain:
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X-ray structure of the rnase domain of the yeast pop2 protein
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Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Expressed in: escherichia coli. Expression_system_taxid: 511693.
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Chains:
A, B
(263 residues)
CATH domain:
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Solution structure of the RNA binding domain from hypothetical protein bab23382
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Source: Mus musculus. House mouse. Organism_taxid: 10090. Gene: riken cdna 1200003i18. Other_details: cell-free protein synthesis
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Chain:
A
(100 residues)
CATH domain:
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Crystal structure of parn nuclease domain
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Source: Synthetic: yes. Homo sapiens. Human. Organism_taxid: 9606. Gene: parn. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B
(300 residues)
CATH domain:
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Crystal structure of native parn nuclease domain
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Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B, C, D
(391 residues)
CATH domains:
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Crystal structure of a tob-hcaf1 complex
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Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(252 residues)
CATH domain:
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Crystal structure of the s. Pombe pop2p deadenylation subunit
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Source: Schizosaccharomyces pombe. Fission yeast. Organism_taxid: 4896. Gene: spcc18.06c (caf1 homologue). Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(255 residues)
CATH domain:
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Solution structure of the cap-binding domain of parn complexed with the cap analog
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Source: Mus musculus. Mouse. Organism_taxid: 10090. Gene: parn
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Chain:
A
(100 residues)
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Crystal structure of the rrm-domain of the poly(a)-specific ribonuclease parn bound to m7gtp
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: parn, dan. Expressed in: escherichia coli.
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Chain:
A
(75 residues)
CATH domain:
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Crystal structure of mouse parn in complex with m7gpppg
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Source: Mus musculus. Mouse. Organism_taxid: 10090. Gene: parn. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B
(383 residues)
CATH domain:
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Structure of s. Pombe pop2p - zn2+ and mn2+ bound form
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Source: Schizosaccharomyces pombe. Fission yeast. Organism_taxid: 4896. Gene: caf1, spcc18.06c. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(252 residues)
CATH domain:
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Structure of s. Pombe pop2p - mg2+ and mn2+ bound form
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Source: Schizosaccharomyces pombe. Fission yeast. Organism_taxid: 4896. Gene: caf1, spcc18.06c. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(252 residues)
CATH domain:
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Crystal structure of the human cnot6l nuclease domain in complex with amp
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6l, ccr4b. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(324 residues)
CATH domain:
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Crystal structure of the human cnot6l nuclease domain in complex with poly(a) DNA
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6l, ccr4b. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes
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Chain:
A
(337 residues)
CATH domain:
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Crystal structure of the human cnot6l nuclease domain
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6l, ccr4b. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chain:
A
(335 residues)
CATH domain:
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Structure of yeast not1 mif4g domain co-crystallized with caf1
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Source: Saccharomyces cerevisiae s288c. Baker's yeast. Organism_taxid: 559292. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: plyss star. Expression_system_variant: plys star.
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Chain:
B
(252 residues)
CATH domain:
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Nuclease module of the yeast ccr4-not complex
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Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 559292. Strain: s288c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Saccharomyces cerevisiae s288c. Expressed in: escherichia coli. Expression_system_taxid: 511693.
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Chains:
A, C, D, E, F, J, K, L
(267 residues)
CATH domain:
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Chaetomium thermophilum pan2:pan3 complex
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Source: Chaetomium thermophilum. Organism_taxid: 209285. Expressed in: escherichia coli. Expression_system_taxid: 469008. Other_details: see publication for full details. Other_details: see publication for details
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Chains:
E, F
(52 residues)
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Structure of the neurospora crassa pan2 wd40 domain
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Source: Neurospora crassa. Organism_taxid: 5141. Atcc: 24698. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: star.
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Chains:
A, B
(324 residues)
CATH domain:
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Structure of the neurospora crassa pan2 catalytic unit (protease and nuclease domain)
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Source: Neurospora crassa. Organism_taxid: 5141. Atcc: 24698. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: star.
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Chain:
A
(609 residues)
CATH domain:
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Complex of neurospora crassa pan2 (wd40) with pan3 (c-term)
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Source: Neurospora crassa. Organism_taxid: 5141. Atcc: 24698. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: star.
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Chain:
A
(324 residues)
CATH domain:
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Complex of neurospora crassa pan2 (wd40-cs1) with pan3 (pseudokinase and c-term)
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Source: Neurospora crassa. Organism_taxid: 5141. Atcc: 24698. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: star.
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Chains:
A, C
(323 residues)
CATH domain:
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Complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
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Source: Chaetomium thermophilum. Organism_taxid: 209285. Strain: dsm 1495. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: star.
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Chain:
A
(329 residues)
CATH domain:
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Structure of human not1 mif4g domain co-crystallized with caf1
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ad-005, cdc39, cnot1, kiaa1007, not1. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: caf1, cnot7.
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Chains:
B, D, F
(264 residues)
CATH domain:
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Structure of the saccharomyces cerevisiae pan2 pseudoubiquitin- hydrolase
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Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: pan2, ygl094c. Expressed in: escherichia coli. Expression_system_taxid: 469008.
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Chains:
A, B
(344 residues)
CATH domain:
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Structure of the saccharomyces cerevisiae pan2 pseudoubiquitin- hydrolase-rnase module
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Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: pan2, ygl094c. Expressed in: trichoplusia ni. Expression_system_taxid: 7111.
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Chain:
A
(627 residues)
CATH domain:
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Structure of the saccharomyces cerevisiae pan2-pan3 core complex
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Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: pan2, ygl094c. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Gene: pan3, ecm35, ykl025c. Expression_system_taxid: 7111
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Chains:
G, D, J, A
(683 residues)
CATH domain:
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The structure of human pde12 residues 161-609
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pde12. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: de3
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Chain:
A
(434 residues)
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The structure of human pde12 residues 161-609 in complex with gsk3036342a
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pde12. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: de3
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Chain:
A
(449 residues)
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Crystal structure of human phosphodiesterase 12
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pde12. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(462 residues)
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Crystal structure of human cnot6l in complex with cytidine-5'- monophosphate
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6l, ccr4b. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(335 residues)
CATH domain:
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Crystal structure of human cnot6l in complex with neomycin
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6l, ccr4b. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(344 residues)
CATH domain:
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Cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
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Source: Saccharomyces cerevisiae (strain atcc 204508 / s288c). Baker's yeast. Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell_line: hi5. Gene: pab1, yer165w.
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Chain:
A
(1040 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module
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Source: Saccharomyces cerevisiae s288c. Baker's yeast. Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108.
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Chain:
A
(605 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module in complex with a7 RNA
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Source: Saccharomyces cerevisiae (strain atcc 204508 / s288c). Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Synthetic: yes. Saccharomyces cerevisiae. Baker's yeast.
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Chain:
A
(595 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module in complex with aaggaa rna
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Source: Saccharomyces cerevisiae s288c. Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Synthetic: yes. Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932.
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Chain:
A
(600 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module in complex with aagga RNA
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Source: Saccharomyces cerevisiae s288c. Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Synthetic: yes. Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932.
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Chain:
A
(594 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module in complex with aauuaa rna
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Source: Saccharomyces cerevisiae (strain atcc 204508 / s288c). Baker's yeast. Organism_taxid: 559292. Strain: atcc 204508 / s288c. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Synthetic: yes.
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Chain:
A
(607 residues)
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Structure of saccharomyces cerevisiae apo pan2 pseudoubiquitin hydrolase-RNA exonuclease (uch-exo) module in complex with aaccaa rna
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Source: Saccharomyces cerevisiae s288c. Organism_taxid: 559292. Gene: pan2, ygl094c. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Synthetic: yes. Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932.
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Chain:
A
(610 residues)
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Crystal structure of the human ccr4-caf1 complex
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot6, ccr4, ccr4a, kiaa1194. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Expression_system_variant: star. Gene: cnot7, caf1.
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Chains:
A, B
(518 residues)
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Structure of the human cnot1(mif4g)-cnot6l-cnot7 complex
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot7, caf1. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Gene: cnot1, cdc39, kiaa1007, not1, ad-005. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
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Chains:
B, C
(264 residues)
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Cryo-em structure of not1:not7:pief
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Source: Legionella pneumophila. Organism_taxid: 446. Gene: pief, jbj86_12865. Expressed in: escherichia coli. Expression_system_taxid: 562. Homo sapiens. Human. Organism_taxid: 9606. Gene: cnot1, cdc39, kiaa1007, not1, ad-005.
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Chain:
C
(254 residues)
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Cryo-em structure of not1:not8:pief
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: smt3, ydr510w, d9719.15, cnot8, calif, pop2. Expressed in: escherichia coli. Expression_system_taxid: 562. Legionella pneumophila. Organism_taxid: 446. Gene: pief, jbj86_12865.
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Chain:
C
(258 residues)
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Human pan2-pan3 deadenylase complex in the apo state
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pan3. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293-t. Gene: pan2, kiaa0710, usp52.
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Chain:
C
(401 residues)
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[IntEnz]
[ExPASy]
[KEGG]
