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PDB code
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Protein
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Structure of nucleoside diphosphate kinase h122g mutant
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group ADP
corresponds to
enzyme product ADP
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Het Group ADP
corresponds to
enzyme product ADP
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3'-fluoro-uridine diphosphate binding to nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C, D, E, F
(150 residues)
CATH domain:
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Bound ligands:
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Het Group FUP
is 70.00% similar to
enzyme product ADP
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Het Group FUP
is 70.00% similar to
enzyme product ADP
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Nucleoside diphosphate kinase isoform b from bovine retina
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Source: Bos taurus. Cattle. Organism_taxid: 9913. Organ: eye. Tissue: retina. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(151 residues)
CATH domain:
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Bound ligands:
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Het Group PCG
is 78.57% similar to
enzyme product ADP
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Het Group PCG
is 78.57% similar to
enzyme product ADP
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Nucleoside diphosphate kinase isoform a from bovine retina
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Source: Bos taurus. Cattle. Organism_taxid: 9913. Organ: retina. Tissue: eye. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
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Bound ligands:
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Het Group GDP
is 96.43% similar to
enzyme product ADP
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Het Group GDP
is 96.43% similar to
enzyme product ADP
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3'-phosphorylated nucleotides binding to nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group PPS
is 65.71% similar to
enzyme product ADP
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Het Group PPS
is 65.71% similar to
enzyme product ADP
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Human nucleoside diphosphate kinase 4
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Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B
(143 residues)
CATH domain:
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Structure of the h122g nucleoside diphosphate kinase / d4t- triphosphate.Mg complex
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group D4T
is 73.53% similar to
enzyme reactant ATP
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Het Group D4T
is 73.53% similar to
enzyme reactant ATP
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Structure of the nucleoside diphosphate kinase/alpha-borano(rp)-tdp.Mg complex
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group TBD
is 67.74% similar to
enzyme product ADP
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Het Group TBD
is 67.74% similar to
enzyme product ADP
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Role of active site resiude lys16 in nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(150 residues)
CATH domain:
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Binding of nucleotides to ndp kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group 3AN
is 92.86% similar to
enzyme product ADP
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Het Group 3AN
is 92.86% similar to
enzyme product ADP
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Structure of the h122a mutant of the nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(150 residues)
CATH domain:
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Crystal structure of human nucleoside diphosphate kinase a
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nm23-h1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
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Chains:
A, B, C, D, E, F
(149 residues)
CATH domain:
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Mycobacterium tuberculosis nucleoside diphosphate kinase
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Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C, D, E, F
(135 residues)
CATH domain:
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Structure of nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group ADP
corresponds to
enzyme product ADP
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Het Group ADP
corresponds to
enzyme product ADP
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P100s nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chain:
A
(150 residues)
CATH domain:
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Azt diphosphate binding to nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group AZD
is 63.64% similar to
enzyme product ADP
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Het Group AZD
is 63.64% similar to
enzyme product ADP
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Ndp kinase mutant (h122g;n119s;f64w) in complex with abazttp
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
A, B
(150 residues)
CATH domain:
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Bound ligands:
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Het Group ABT
is 63.16% similar to
enzyme reactant ATP
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Het Group ABT
is 63.16% similar to
enzyme reactant ATP
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Ndp kinase mutant (h122g) complex with rtp
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
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Chains:
A, B, C
(150 residues)
CATH domain:
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Bound ligands:
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Het Group RTP
is 81.82% similar to
enzyme reactant ATP
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Het Group RTP
is 81.82% similar to
enzyme reactant ATP
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Crystal structure of nucleoside diphosphate kinase from bacillus halodenitrificans
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Source: Virgibacillus halodenitrificans. Organism_taxid: 1482
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Chain:
A
(149 residues)
CATH domain:
|
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Thermal stability of hexameric and tetrameric nucleoside, diphosphate kinases
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
|
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Chain:
A
(150 residues)
CATH domain:
|
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X-ray structure of nucleoside diphosphate kinase complexed with dtdp and mg2+ at 2 a resolution
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Source: Dictyostelium discoideum. Organism_taxid: 44689
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Chain:
A
(150 residues)
CATH domain:
|
|
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Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
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Het Group TYD
is 73.33% similar to
enzyme product ADP
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|
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X-ray structure of nucleoside diphosphate kinase
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|
|
Source: Dictyostelium discoideum. Organism_taxid: 44689
|
|
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Chain:
A
(148 residues)
CATH domain:
|
|
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The awd nucleotide diphosphate kinase from drosophila
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Source: Drosophila melanogaster. Fruit fly. Organism_taxid: 7227
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Chains:
A, B, C
(152 residues)
CATH domain:
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Adenosine 5'-diphosphate binding and the active site of nucleoside diphosphate kinase
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Source: Dictyostelium discoideum. Organism_taxid: 44689
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Chains:
A, B
(150 residues)
CATH domain:
|
|
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Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
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Het Group ADP
corresponds to
enzyme product ADP
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Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 angstroms resolution
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Source: Myxococcus xanthus. Organism_taxid: 34. Gene: cmp. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Chains:
R, L
(144 residues)
CATH domain:
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Bound ligands:
|
Het Group CMP
is 81.48% similar to
enzyme product ADP
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Het Group CMP
is 81.48% similar to
enzyme product ADP
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Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 angstroms resolution
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Source: Myxococcus xanthus. Organism_taxid: 34
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Chains:
R, L
(143 residues)
CATH domain:
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|
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Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
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Het Group ADP
corresponds to
enzyme product ADP
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Refined x-ray structure of dictyostelium nucleoside diphosphate kinase at 1,8 angstroms resolution
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Source: Dictyostelium discoideum. Organism_taxid: 44689
|
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Chain:
A
(150 residues)
CATH domain:
|
|
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The crystal structure of a human nucleoside diphosphate kinase, nm23- h2
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nm23-h2. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
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Chains:
R, L, T, U, N, O
(151 residues)
CATH domain:
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Mechanism of phosphate transfer by nucleoside diphosphate kinase: x- ray structures of a phospho-histidine intermediate of the enzymes from drosophila and dictyostelium
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Source: Dictyostelium discoideum. Organism_taxid: 44689
|
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Chain:
A
(150 residues)
CATH domain:
|
|
|
|
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Mechanism of phosphate transfer by nucleoside diphosphate kinase: x- ray structures of a phospho-histidine intermediate of the enzymes from drosophila and dictyostelium
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Source: Drosophila melanogaster. Fruit fly. Organism_taxid: 7227
|
|
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Chains:
A, B, C
(152 residues)
CATH domain:
|
|
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X-ray structure of nm23 human nucleoside diphosphate kinase b complexed with gdp at 2 angstroms resolution
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Source: Homo sapiens. Human. Organism_taxid: 9606
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
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|
|
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|
Nucleoside diphosphate kinase
|
|
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
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Chain:
X
(148 residues)
CATH domain:
|
|
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Crystal structure of nucleoside diphosphate kinase from rice
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Source: Oryza sativa. Rice. Organism_taxid: 4530. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
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Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(149 residues)
CATH domain:
|
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Crystal structure of nucleoside diphosphate kinase 2 from arabidopsis
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Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: ndpk2. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
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Chains:
A, B, C, D, E, F
(153 residues)
CATH domain:
|
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Structure of nucleoside diphosphate kinase 2 with bound dgtp from arabidopsis
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Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: ndpk2. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
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Chains:
A, B, C, D, E, F
(153 residues)
CATH domain:
|
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Bound ligands:
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Het Group DGT
is 93.75% similar to
enzyme reactant ATP
|
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Het Group DGI
is 92.86% similar to
enzyme product ADP
|
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Het Group DGT
is 93.75% similar to
enzyme reactant ATP
|
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|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
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Ndp kinase in complex with adenosine phosphonoacetic acid
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Source: Dictyostelium discoideum. Organism_taxid: 44689. Gene: ndkc, ndkb, gip17, dd_02290, dd_02289. Expressed in: escherichia coli. Expression_system_taxid: 562
|
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Chains:
A, B, C, D, E, F
(150 residues)
CATH domain:
|
|
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Bound ligands:
|
Het Group SON
is 55.88% similar to
enzyme product ADP
|
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Het Group SON
is 55.88% similar to
enzyme product ADP
|
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|
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Crystal structure of the human ump/cmp kinase in open conformation
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Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: uck. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
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Chain:
A
(194 residues)
CATH domain:
|
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Crystal structure of arabidopsis thaliana nucleoside diphosphate kinase 1
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Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: ndpk1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
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|
Chains:
A, B, C, D, E, F
(149 residues)
CATH domain:
|
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X-ray structure of human nucleoside diphosphate kinase a complexed with adp at 2 a resolution
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Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
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|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
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Het Group ADP
corresponds to
enzyme product ADP
|
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Identification and characterization of the first plant g-quadruplex binding protein encoded by the zea mays l. Nucleoside diphosphate1 gene, zmndpk1
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Source: Zea mays. Maize. Organism_taxid: 4577. Strain: w23. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
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|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(149 residues)
CATH domain:
|
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Structure and mutational analysis of a plant mitochondrial nucleoside diphosphate kinase: identification of residues involved in serine phosphorylation and oligomerization.
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|
Source: Pisum sativum. Pea. Organism_taxid: 3888. Strain: oregon sugar pod. Expressed in: escherichia coli dh5[alpha]. Expression_system_taxid: 668369.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
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Crystal structure of nucleoside diphosphate kinase from thermus thermophilus hb8
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Source: Thermus thermophilus. Organism_taxid: 274. Gene: ndk. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
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|
Chains:
A, B
(137 residues)
CATH domain:
|
|
|
|
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|
Crystal structure of nucleoside diphosphate kinase from thermus thermophilus hb8 in complex with gdp
|
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|
Source: Thermus thermophilus. Organism_taxid: 274. Gene: ndk. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(137 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from thermus thermophilus hb8 in complex with atp and adp
|
|
|
Source: Thermus thermophilus. Organism_taxid: 274. Gene: ndk. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(137 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ATP
corresponds to
enzyme reactant ATP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ATP
corresponds to
enzyme reactant ATP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Plasmodium falciparum nucleoside diphosphate kinase b
|
|
|
Source: Plasmodium falciparum. Organism_taxid: 36329. Strain: 3d7. Gene: pf13_0349. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(149 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure analysis of an ndp kinase from pyrobaculum aerophilum
|
|
|
Source: Pyrobaculum aerophilum. Organism_taxid: 13773. Strain: strain im2 dsm 7523 atcc 51768. Gene: ndk. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(182 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of human ak1a in complex with ap5a
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(195 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group AP5
is 54.39% similar to
enzyme reactant ATP
|
|
|
Het Group AP5
is 54.39% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Structure of human nucleoside-diphosphate kinase 3
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, D
(152 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of human adenylate kinase 4, ak4
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak3, ak4. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(221 residues)
CATH domain:
|
|
|
|
|
|
Structure of a halophilic nucleoside diphosphate kinase from halobacterium salinarum
|
|
|
Source: Halobacterium salinarum. Organism_taxid: 2242. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(155 residues)
CATH domain:
|
|
|
|
|
|
Structure of a halophilic nucleoside diphosphate kinase from halobacterium salinarum in complex with cdp
|
|
|
Source: Halobacterium salinarum. Organism_taxid: 2242. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I
(152 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of acanthamoeba polyphaga mimivirus ndk, the first viral nucleoside diphosphate kinase
|
|
|
Source: Mimivirus. Organism_taxid: 315393. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(129 residues)
CATH domain:
|
|
|
|
|
|
X-ray structure of acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with tdp
|
|
|
Source: Mimivirus. Organism_taxid: 315393. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of human adenylate kinase 4 (ak4) in complex with diguanosine pentaphosphate
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak4. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(220 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GP5
is 52.54% similar to
enzyme reactant ATP
|
|
|
Het Group GP5
is 52.54% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of ndp kinase complexed with mg, adp, and bef3
|
|
|
Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C
(150 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Structure of adenylate kinase 5
|
|
|
Source: Homo sapiens. Organism_taxid: 9606. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F
(196 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
|
|
|
|
Structure of adenylate kinase 1 in complex with p1,p4-di(adenosine) tetraphosphate
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(195 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group B4P
is 58.49% similar to
enzyme reactant ATP
|
|
|
Het Group B4P
is 58.49% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of nucleotide diphosphate kinase from pyrococcus horikoshii
|
|
|
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(153 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase in complex with atp analog
|
|
|
Source: Pyrococcus horikoshii (strain atcc 700860 / dsm 12428 / jcm 9974 / nbrc 100139 / ot-3). Organism_taxid: 70601. Strain: atcc 700860 / dsm 12428 / jcm 9974 / nbrc 100139 / ot-3. Gene: ndk, ph0698. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(154 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase in complex with gdp
|
|
|
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(154 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase in complex with gtp analog
|
|
|
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(153 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GNP
is 82.14% similar to
enzyme product ADP
|
|
|
Het Group GNP
is 82.14% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase in complex with adp
|
|
|
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(154 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of complex between adenine nucleotide and nucleoside diphosphate kinase
|
|
|
Source: Pyrococcus horikoshii. Organism_taxid: 70601. Strain: ot3. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(154 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Escherichia coli nucleoside diphosphate kinase
|
|
|
Source: Escherichia coli. Organism_taxid: 562. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(142 residues)
CATH domain:
|
|
|
|
|
|
Human nucleoside diphosphate kinase a complexed with adp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
S120g mutant of human nucleoside diphosphate kinase a complexed with adp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 angstroms resolution
|
|
|
Source: Myxococcus xanthus. Organism_taxid: 34
|
|
|
Chains:
R, L
(144 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of pndk from bacillus anthracis
|
|
|
Source: Bacillus anthracis. Organism_taxid: 1392. Expressed in: escherichia coli. Expression_system_taxid: 511693.
|
|
|
Chain:
A
(148 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from haloarcula quadrata
|
|
|
Source: Haloarcula quadrata. Organism_taxid: 182779. Strain: jcm 11048. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D
(153 residues)
CATH domain:
|
|
|
|
|
|
Refined structure of porcine cytosolic adenylate kinase at 2.1 angstroms resolution
|
|
|
Source: Sus scrofa. Pig. Organism_taxid: 9823
|
|
|
Chain:
A
(195 residues)
CATH domain:
|
|
|
|
|
|
Saccharomyces cerevisiae nucleoside diphosphate kinase
|
|
|
Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: ndk1, ynk, ynk1. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(145 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dgdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Apmv. Organism_taxid: 212035. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(131 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the nm23-h2 transcription factor complex with dinucleotide d(ag)
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Synthetic construct. Organism_taxid: 32630
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DG
is 75.00% similar to
enzyme product ADP
|
|
|
Het Group DG
is 75.00% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of r88a mutant of the nm23-h2 transcription factor
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of the nm23-h2 transcription factor complex with gdp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with tdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Apmv. Organism_taxid: 212035. Gene: ndk, mimi_r418. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with gdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Apmv. Organism_taxid: 212035. Gene: ndk, mimi_r418. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with cdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: ndk, mimi_r418. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(130 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
X-ray structure of acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with udp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: ndk, mimi_r418. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn mutant complexed with gdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: ndk, mimi_r418. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(134 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
X-ray structure of acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with dudp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DUD
is 75.86% similar to
enzyme product ADP
|
|
|
Het Group DUD
is 75.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l double mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-r107g double mutant complexed with dgdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with dgdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(134 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
Het Group DGI
is 92.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with cdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with dcdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(134 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group YYY
is 82.14% similar to
enzyme product ADP
|
|
|
Het Group YYY
is 82.14% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk r107g mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l-r107g double mutant complexed with udp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l-r107g double mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(131 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l-r107g double mutant complexed with gdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(130 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l double mutant complexed with cdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(134 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk +kpn-n62l-r107g triple mutant complexed with dudp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(134 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DUD
is 75.86% similar to
enzyme product ADP
|
|
|
Het Group DUD
is 75.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l mutant complexed with udp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(131 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Structure of ndpk h122g and tenofovir-diphosphate
|
|
|
Source: Dictyostelium discoideum. Slime mold. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(150 residues)
CATH domain:
|
|
|
|
|
|
Structure of mimivirus ndk +kpn - n62l double mutant complexed with dtdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(132 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk complexed with gdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(133 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the mimivirus ndk n62l mutant complexed with cdp
|
|
|
Source: Acanthamoeba polyphaga mimivirus. Organism_taxid: 212035. Gene: mimi_r418, ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, C, E, B, D, F
(132 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase family protein from babesia bovis
|
|
|
Source: Babesia bovis. Organism_taxid: 484906. Strain: t2bo. Gene: bbov_iii005290. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(148 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of human nm23-h1
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(152 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi, cubic form, apo
|
|
|
Source: Encephalitozoon cuniculi. Microsporidian parasite. Organism_taxid: 6035. Gene: ecu06_1530, hm-1:imss, ndk1. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(147 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of human ak4(l171p)
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak4. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(214 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of leishmania nucleoside diphosphate kinase b with unordered nucleotide-binding loop.
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf32.2950, ndkb. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chain:
A
(117 residues)
CATH domain:
|
|
|
|
|
|
Structure of leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf32.2950, ndkb. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
|
|
|
|
Structure of leishmania ndkb complexed with amp.
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf32.2950, ndkb. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N
(150 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
|
|
|
|
Structure of leishmania ndkb complexed with adp.
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf32.2950, ndkb. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of a nucleoside diphosphate kinase from campylobacter jejuni
|
|
|
Source: Campylobacter jejuni subsp. Jejuni. Organism_taxid: 192222. Strain: nctc 11168. Gene: cj0332c, ndk. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D
(137 residues)
CATH domain:
|
|
|
|
|
|
Nucleoside diphosphate kinase b from trypanosoma cruzi
|
|
|
Source: Trypanosoma cruzi. Organism_taxid: 5693. Strain: cl brener. Gene: nucleoside diphosphate kinase b gi: 71667531, tc00.1047053508707.200. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(150 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 93062. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(149 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase complexed with gtp
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 93062. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(149 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GTP
is 96.88% similar to
enzyme reactant ATP
|
|
|
Het Group GTP
is 96.88% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase complexed with cdp
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 93062. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H
(149 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase complexed with adp
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 93062. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F
(149 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase complexed with udp
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 93062. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H
(149 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of staphylococcus aureus nucleoside diphosphate kinase complexed with adp and vanadate
|
|
|
Source: Staphylococcus aureus subsp. Aureus. Organism_taxid: 46170. Strain: col. Gene: ndk, sacol1509. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H
(149 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from giardia lamblia featuring a disordered dinucleotide binding site
|
|
|
Source: Giardia lamblia. Organism_taxid: 184922. Strain: atcc 50803 / wb clone c6. Gene: gl50803_11301. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chain:
A
(112 residues)
CATH domain:
|
|
|
|
|
|
Wild-type nucleoside diphosphate kinase derived from halomonas sp. 593
|
|
|
Source: Halomonas. Organism_taxid: 195704. Strain: 593. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(140 residues)
CATH domain:
|
|
|
|
|
|
Wild-type nucleoside diphosphate kinase derived from halomonas sp. 593
|
|
|
Source: Halomonas. Organism_taxid: 195704. Strain: 593. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E
(140 residues)
CATH domain:
|
|
|
|
|
|
E134a mutant nucleoside diphosphate kinase derived from halomonas sp. 593
|
|
|
Source: Halomonas. Organism_taxid: 195704. Strain: 593. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H
(140 residues)
CATH domain:
|
|
|
|
|
|
E134a mutant nucleoside diphosphate kinase derived from halomonas sp. 593
|
|
|
Source: Halomonas. Organism_taxid: 195704. Strain: 593. Gene: ndk. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
(136 residues)
CATH domain:
|
|
|
|
|
|
Purification, characterization and structure of nucleoside diphosphate kinase from drosophila s2 cells
|
|
|
Source: Drosophila melanogaster. Fruit fly. Organism_taxid: 7227. Gene: awd, k-pn, cg2210. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C
(153 residues)
CATH domain:
|
|
|
|
|
|
Orthorhombic crystal form c222 of the aquifex aeolicus nucleoside diphosphate kinase
|
|
|
Source: Aquifex aeolicus. Organism_taxid: 63363. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chain:
A
(141 residues)
CATH domain:
|
|
|
|
|
|
Orthorhombic crystal form p21212 of the aquifex aeolicus nucleoside diphosphate kinase
|
|
|
Source: Aquifex aeolicus. Organism_taxid: 63363. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, C
(141 residues)
CATH domain:
|
|
|
|
|
|
Hexagonal crystal form p61 of the aquifex aeolicus nucleoside diphosphate kinase
|
|
|
Source: Aquifex aeolicus. Organism_taxid: 63363. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H
(141 residues)
CATH domain:
|
|
|
|
|
|
Hexagonal form p6122 of the aquifex aeolicus nucleoside diphosphate kinase (first stage of radiation damage)
|
|
|
Source: Aquifex aeolicus. Organism_taxid: 63363. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(141 residues)
CATH domain:
|
|
|
|
|
|
Hexagonal form p6122 of the aquifex aeolicus nucleoside diphosphate kinase (final stage of radiation damage)
|
|
|
Source: Aquifex aeolicus. Organism_taxid: 63363. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(141 residues)
CATH domain:
|
|
|
|
|
|
Crystal form i of the d93n mutant of nucleoside diphosphate kinase from mycobacterium tuberculosis
|
|
|
Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: ril.
|
|
|
Chain:
A
(135 residues)
CATH domain:
|
|
|
|
|
|
Crystal form ii of the d93n mutant of nucleoside diphosphate kinase from mycobacterium tuberculosis
|
|
|
Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: ril.
|
|
|
Chains:
A, B
(135 residues)
CATH domain:
|
|
|
|
|
|
R80n mutant of nucleoside diphosphate kinase from mycobacterium tuberculosis
|
|
|
Source: Mycobacterium tuberculosis. Organism_taxid: 1773. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: ril.
|
|
|
Chains:
A, B, C, D, E, F
(135 residues)
CATH domain:
|
|
|
|
|
|
High resolution structure of the nucleoside diphosphate kinase
|
|
|
Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 511693.
|
|
|
Chain:
A
(151 residues)
CATH domain:
|
|
|
|
|
|
Ndpk in complex with (rp)-spmpapp
|
|
|
Source: Dictyostelium discoideum. Organism_taxid: 44689. Expressed in: escherichia coli. Expression_system_taxid: 511693.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from borrelia burgdorferi
|
|
|
Source: Borrelia burgdorferi. Lyme disease spirochete. Organism_taxid: 139. Gene: ndk, bb_0463. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F
(169 residues)
CATH domain:
|
|
|
|
|
|
The structure of nucleoside diphosphate kinase (ndk) from burkholderia thailandensis
|
|
|
Source: Burkholderia thailandensis. Organism_taxid: 271848. Strain: e264 / atcc 700388 / dsm 13276 / cip 106301. Gene: ndk, bth_i2231. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(140 residues)
CATH domain:
|
|
|
|
|
|
Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with bound vanadate and adp
|
|
|
Source: Borrelia burgdorferi. Lyme disease spirochete. Organism_taxid: 139. Gene: ndk, bb_0463. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F
(168 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
The structure of nucleoside diphosphate kinase (ndk) from burkholderia thailandensis bound to deoxyadenosine monophosphate
|
|
|
Source: Burkholderia thailandensis. Organism_taxid: 271848. Strain: e264 / atcc 700388 / dsm 13276 / cip 106301. Gene: ndk, bth_i2231. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(142 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group D5M
is 81.48% similar to
enzyme product ADP
|
|
|
Het Group D5M
is 81.48% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of oxidized human nm23-h1
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(151 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase b from trypanosoma brucei, apo form
|
|
|
Source: Trypanosoma brucei brucei. Organism_taxid: 999953. Strain: 927/4 gutat10.1. Gene: tb11.01.7800. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, C, B, D, E, F
(141 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase b from trypanosoma brucei, udp-bound form
|
|
|
Source: Trypanosoma brucei brucei. Organism_taxid: 999953. Strain: 927/4 gutat10.1. Gene: tb11.01.7800. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(150 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase b from trypanosoma brucei bound to cdp
|
|
|
Source: Trypanosoma brucei brucei. Organism_taxid: 999953. Strain: 927/4 gutat10.1. Gene: tb11.01.7800. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(153 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase b from trypanosoma brucei bound to gtp
|
|
|
Source: Trypanosoma brucei brucei. Organism_taxid: 999953. Strain: 927/4 gutat10.1. Gene: tb11.01.7800. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C
(152 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Structure of nucleoside diphosphate kinase (ndk) from burkholderia thailandensis bound to adp
|
|
|
Source: Burkholderia thailandensis. Organism_taxid: 271848. Strain: e264 / atcc 700388 / dsm 13276 / cip 106301. Gene: ndk, bth_i2231. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(142 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the nucleoside diphosphate kinase b from leishmania braziliensis
|
|
|
Source: Leishmania braziliensis. Organism_taxid: 5660. Gene: lbrm_32_3210. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(141 residues)
CATH domain:
|
|
|
|
|
|
2.4 angstrom resolution crystal structure of putative nucleoside diphosphate kinase from toxoplasma gondii.
|
|
|
Source: Toxoplasma gondii me49. Organism_taxid: 508771. Strain: me49. Gene: tgme49_295350. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(153 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase at 1.92 a resolution from acinetobacter baumannii
|
|
|
Source: Acinetobacter baumannii. Organism_taxid: 470. Strain: atcc 19606. Gene: abbl099_02780, bl01_17035, fl75_03050, fl80_07750, gq86_04945, iomtu433_3298, ix87_17090, lx00_02580, ndk, p795_14800. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, F, G, H, I
(143 residues)
CATH domain:
|
|
|
|
|
|
Crystallographic structure of nucleoside diphosphate kinase from litopenaeus vannamei complexed with dadp
|
|
|
Source: Litopenaeus vannamei. Pacific white shrimp. Organism_taxid: 6689. Expressed in: escherichia coli. Expression_system_taxid: 511693. Expression_system_variant: salt inducible.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group DAT
is 96.30% similar to
enzyme product ADP
|
|
|
Het Group DAT
is 96.30% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystallographic structure of nucleoside diphosphate kinase from litopenaeus vannamei complexed with dcdp
|
|
|
Source: Litopenaeus vannamei. Pacific white shrimp. Organism_taxid: 6689. Expressed in: escherichia coli. Expression_system_taxid: 511693. Expression_system_variant: salt inducible.
|
|
|
Chains:
A, B, C
(151 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group YYY
is 82.14% similar to
enzyme product ADP
|
|
|
Het Group YYY
is 82.14% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystallographic structure of nucleoside diphosphate kinase from litopenaeus vannamei complexed with adp
|
|
|
Source: Litopenaeus vannamei. Pacific white shrimp. Organism_taxid: 6689. Expressed in: escherichia coli. Expression_system_taxid: 511693. Expression_system_variant: salt inducible.
|
|
|
Chains:
A, B, C
(128 residues)
CATH domain:
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Acinetobacter baumannii sdf ndk
|
|
|
Source: Acinetobacter baumannii sdf. Organism_taxid: 509170. Gene: ndk, absdf3006. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chain:
A
(145 residues)
CATH domain:
|
|
|
|
|
|
Acinetobacter baumannii sdf ndk
|
|
|
Source: Acinetobacter baumannii. Organism_taxid: 509170. Strain: sdf. Gene: ndk, absdf3006. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chain:
A
(140 residues)
CATH domain:
|
|
|
|
|
|
1.7 angstrom resolution crystal structure of putative nucleoside diphosphate kinase from toxoplasma gondii with tyrosine of tag bound to active site
|
|
|
Source: Toxoplasma gondii me49. Organism_taxid: 508771. Gene: tgme49_295350. Expressed in: escherichia coli 'bl21-gold(de3)plyss ag'. Expression_system_taxid: 866768.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(152 residues)
CATH domain:
|
|
|
|
|
|
Structure of leishmania nucleoside diphostate kinase mutant p95s
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf_32_2950. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C
(144 residues)
CATH domain:
|
|
|
|
|
|
Structure of leishmania nucleoside diphosphate kinase mutant p100s/del5-cterm
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf_32_2950. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(137 residues)
CATH domain:
|
|
|
|
|
|
Structure of leishmania nucleoside diphostate kinase mutant del5-cterm
|
|
|
Source: Leishmania major. Organism_taxid: 5664. Gene: l1648.07, lmjf_32_2950. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(139 residues)
CATH domain:
|
|
|
|
|
|
Structural, functional characterization and discovery of novel inhibitors of leishmania amazonensis nucleoside diphosphatase kinase (ndk)
|
|
|
Source: Leishmania amazonensis. Organism_taxid: 5659. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chain:
A
(112 residues)
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from schistosoma mansoni
|
|
|
Source: Schistosoma mansoni. Blood fluke. Organism_taxid: 6183. Gene: smp_092750. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(149 residues)
CATH domain:
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from schistosoma mansoni is space group p6322
|
|
|
Source: Schistosoma mansoni. Blood fluke. Organism_taxid: 6183. Gene: smp_092750. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(150 residues)
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from schistosoma mansoni in complex with adp
|
|
|
Source: Schistosoma mansoni. Blood fluke. Organism_taxid: 6183. Gene: smp_092750. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of a nucleoside diphosphate kinase from naegleria fowleri
|
|
|
Source: Naegleria fowleri. Amoeba. Organism_taxid: 5763. Strain: atcc 30863. Gene: nf0036070. Expressed in: escherichia coli. Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
|
|
|
|
|
|
Structure of nme1 covalently conjugated to imidazole fluorosulfate
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(149 residues)
|
|
|
|
|
|
Crystal structure of nucleoside diphosphate kinase from neisseria gonorrhoeae in complex with citrate
|
|
|
Source: Neisseria gonorrhoeae nccp11945. Organism_taxid: 521006. Gene: ndk, ngk_1320. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
(140 residues)
|
|
|
|
|
|
Nucleoside diphosphate kinase from vibrio cholerae is a thermolabile type ii tetramer
|
|
|
Source: Vibrio cholerae serotype o1 (strain m66-2). Organism_taxid: 579112. Strain: m66-2. Gene: ndk, vcm66_0714. Expressed in: escherichia coli. Expression_system_taxid: 562.
|
|
|
Chains:
A, B
(125 residues)
|
|
|
|
|
|
Crystal structure of adenylate kinase
|
|
|
Source: Notothenia coriiceps. Organism_taxid: 8208. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(185 residues)
|
|
|
|
|
|
Crystal structure of notothenia coriiceps adenylate kinase variant
|
|
|
Source: Notothenia coriiceps. Organism_taxid: 8208. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(186 residues)
|
|
|
|
|
|
Crystal structure of notothenia coriiceps adenylate kinase variant
|
|
|
Source: Notothenia coriiceps. Organism_taxid: 8208. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(186 residues)
|
|
|
|
|
|
Crystal structure of adenylate kinase
|
|
|
Source: Danio rerio. Zebrafish. Organism_taxid: 7955. Gene: ak1, ak1, zgc:91930. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(192 residues)
|
|
|
|
|
|
Crystal structure of notothenia coriiceps adenylate kinase variant
|
|
|
Source: Notothenia coriiceps. Organism_taxid: 8208. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(189 residues)
|
|
|
|
|
|
Crystal structure of notothenia coriiceps adenylate kinase variant
|
|
|
Source: Notothenia coriiceps. Organism_taxid: 8208. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(186 residues)
|
|
|
|
|
|
Crystal structure of poecilia reticulata adenylate kinase
|
|
|
Source: Poecilia reticulata. Organism_taxid: 8081. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B
(191 residues)
|
|
|
|
|
|
Crystal structure of xiphophorus maculatus adenylate kinase
|
|
|
Source: Xiphophorus maculatus. Southern platyfish. Organism_taxid: 8083. Gene: ak1. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
B, A
(188 residues)
|
|
|
|
|
|
Crystal structure of tetrameric nucleoside diphosphate kinase at 1.98 a resolution from acinetobacter baumannii
|
|
|
Source: Acinetobacter baumannii. Organism_taxid: 575584. Strain: atcc 19606 / dsm 30007 / cip 70.34 / jcm 6841 / nbrc 109757 / ncimb 12457 / nctc 12156 / 81. Gene: ndk, f911_03401, hmpref0010_01731. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D
(143 residues)
|
|
|
|
|
|
Crystal structure of octameric form of nucleoside diphosphate kinase from acinetobacter baumannii at 2.2 a resolution
|
|
|
Source: Acinetobacter baumannii. Organism_taxid: 470. Gene: ndk, a7a59_04275, a7m79_04705, a7m90_00500, a7n09_02655, ab895_2022, ab988_1826, ab994_3665, abuw_3381, apd06_17770, aze33_02560, b4r90_00300, b9x91_01430, b9x95_00285, bgc29_14850, cas83_00635, cas84_07305, cat05_09960, cat56_03875, cat78_05970, cbe85_04645, cbi29_00577, ix87_17090, lv38_00051, nt90_02330. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F, G, H
(143 residues)
|
|
|
|
|
|
Aspergillus fumigatus af293 ndk
|
|
|
Source: Aspergillus fumigatus af293. Aspergillus fumigatus. Organism_taxid: 330879. Strain: af293. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chain:
A
(149 residues)
|
|
|
|
|
|
Crystal structure of a nucleoside diphosphate kinase ndk from helicobacter pylori
|
|
|
Source: Helicobacter pylori. Organism_taxid: 210. Gene: ndk, hpg27_182. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F, G, H
(138 residues)
|
|
|
|
|
|
The crystal of nucleoside diphosphate kinase from aspergillus flavus
|
|
|
Source: Aspergillus flavus nrrl3357. Organism_taxid: 332952. Strain: nrrl3357. Gene: afla_006300. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, Q, R, U, V, W, X, O, P, S, T
(148 residues)
|
|
|
|
|
|
Crystallographic analysis of nucleoside diphosphate kinase (ndk) from aspergillus flavus
|
|
|
Source: Aspergillus flavus (strain atcc 200026 / fgsc a1120 / nrrl 3357 / jcm 12722 / srrc 167). Organism_taxid: 332952. Strain: atcc 200026 / fgsc a1120 / nrrl 3357 / jcm 12722 / srrc 167. Gene: afla_006300. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, Q, R, U, V, W, X, O, P, S, T
(152 residues)
|
|
|
|
|
|
R80a mutant of nucleoside diphosphate kinase from mycobacterium tuberculosis
|
|
|
Source: Mycobacterium tuberculosis (strain atcc 25177 / h37ra). Organism_taxid: 419947. Strain: atcc 25177 / h37ra. Gene: ndk, mra_2471. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Expression_system_variant: ril.
|
|
|
Chains:
A, B, C, D, E, F
(135 residues)
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C, D, E, F
(156 residues)
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to adp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to gdp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C
(153 residues)
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to udp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C, E, G, H
(153 residues)
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to idp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C
(153 residues)
|
|
|
|
Bound ligands:
|
Het Group IDP
is 92.86% similar to
enzyme product ADP
|
|
|
Het Group IDP
is 92.86% similar to
enzyme product ADP
|
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to dtdp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C, E, G, H
(154 residues)
|
|
|
|
Bound ligands:
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
Het Group TYD
is 73.33% similar to
enzyme product ADP
|
|
|
|
|
|
|
Nucleoside diphosphate kinase from aspergillus fumgiatus af293 bound to cdp
|
|
|
Source: Aspergillus fumigatus af293. Organism_taxid: 330879. Strain: atcc mya-4609 / af293 / cbs 101355 / fgsc a1100. Gene: ndk1, afua_5g03490. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C, E, G, H
(155 residues)
|
|
|
|
Bound ligands:
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
Het Group CDP
is 85.71% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human adenylate kinase 1 (hak1) mutant-r128w
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak1. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chain:
A
(185 residues)
|
|
|
|
|
|
The crystal structure of human ump-cmp kinase from biortus.
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: cmpk1, cmk, cmpk, uck, umk, umpk. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chain:
A
(192 residues)
|
|
|
|
|
|
Chlamydomonas reinhardtii radial spoke head and neck (recombinant)
|
|
|
Source: Chlamydomonas reinhardtii. Organism_taxid: 3055. Gene: rsp10, chlre_01g005450v5, chlredraft_185792. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Gene: rsp1, chlredraft_196412. Gene: rsp23, chlre_16g654300v5, chlredraft_139197. Gene: rsp2, chlredraft_186281. Gene: rsp3.
|
|
|
Chain:
K
(158 residues)
|
|
|
|
|
|
Radial spoke 1 isolated from chlamydomonas reinhardtii
|
|
|
Source: Chlamydomonas reinhardtii. Organism_taxid: 3055. Organism_taxid: 3055
|
|
|
Chains:
i, j
(201 residues)
|
|
|
|
|
|
Nme2 bound to myristoyl-coa
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group MYA
is 81.82% similar to
enzyme product ADP
|
|
|
Het Group MYA
is 81.82% similar to
enzyme product ADP
|
|
|
|
|
|
|
Trypanosoma cruzi nucleoside diphosphate kinase 1 form a quinary multihexameric structure
|
|
|
Source: Trypanosoma cruzi. Organism_taxid: 5693. Gene: c3747_234g48, c3747_68g44, c4b63_80g21. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
(151 residues)
|
|
|
|
|
|
Solution structure of human adenylate kinase 1 (hak1)
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak1. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chain:
A
(194 residues)
|
|
|
|
|
|
Nme1 in complex with succinyl-coa
|
|
|
Source: Mus musculus. House mouse. Organism_taxid: 10090. Gene: nme1, nm23. Expressed in: escherichia coli 'bl21-gold(de3)plyss ag'. Expression_system_taxid: 866768.
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group SCA
is 87.10% similar to
enzyme product ADP
|
|
|
Het Group SCA
is 87.10% similar to
enzyme product ADP
|
|
|
|
|
|
|
Nme1 in complex with adp
|
|
|
Source: Mus musculus. House mouse. Organism_taxid: 10090. Gene: nme1, nm23. Expressed in: escherichia coli 'bl21-gold(de3)plyss ag'. Expression_system_taxid: 866768.
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Nme1 in complex with coa
|
|
|
Source: Mus musculus. House mouse. Organism_taxid: 10090. Gene: nme1, nm23. Expressed in: escherichia coli 'bl21-gold(de3)plyss ag'. Expression_system_taxid: 866768.
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
|
|
|
|
Bound ligands:
|
Het Group COA
is 87.10% similar to
enzyme product ADP
|
|
|
Het Group COA
is 87.10% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human nme-1 in complex with coa
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group PAP
is 87.10% similar to
enzyme product ADP
|
|
|
Het Group PAP
is 87.10% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the human nucleoside diphosphate kinase b domain in complex with the product at-8500 formed by catalysis of compound at-9010
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
|
|
|
|
Bound ligands:
|
Het Group 7QT
is 86.67% similar to
enzyme product ADP
|
|
|
Het Group 7QT
is 86.67% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of the human nucleoside-diphosphate kinase b domain bound to compound diphosphate form of at-9052-sp.
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme2, nm23b. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group IF9
is 80.65% similar to
enzyme product ADP
|
|
|
Het Group IF9
is 80.65% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human ndpk-c unliganded
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
|
|
Human ndpk-c in complex with camp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
|
|
|
|
Bound ligands:
|
Het Group CMP
is 81.48% similar to
enzyme product ADP
|
|
|
Het Group CMP
is 81.48% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human ndpk-c in complex with gdp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F, G, H, I, J, K, L
(151 residues)
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human ndpk-c in complex with adp and mg2+
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Human ndpk-c in complex with udp and mg2+
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(152 residues)
|
|
|
|
Bound ligands:
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
Het Group UDP
is 79.31% similar to
enzyme product ADP
|
|
|
|
|
|
|
Human ndpk-c in complex with adp
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme3. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(151 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Human adenylate kinase 1 (hak1) mutant-r97w
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ak1. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chain:
A
(194 residues)
|
|
|
|
|
|
Nme1 94-phosphoserine
|
|
|
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: nme1, ndpka, nm23. Expressed in: escherichia coli. Expression_system_taxid: 562
|
|
|
Chains:
A, B, C, D, E, F
(149 residues)
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase cryptosporidium parvum
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with thymidine-5'-phosphate
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group TMP
is 60.00% similar to
enzyme product ADP
|
|
|
Het Group TMP
is 60.00% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with cytidine-5'-diphosphate and cytidine-5'-triphosphate
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(150 residues)
|
|
|
|
Bound ligands:
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with with guanosine-5'-diphosphate and amp-pnp
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
Het Group GDP
is 96.43% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with with adp and ctp
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group CTP
is 87.50% similar to
enzyme reactant ATP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum containing phosphorylated active site histidine
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with with adp
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
Het Group ADP
corresponds to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase from cryptosporidium parvum in complex with citrate
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase cryptosporidium parvum in complex with atp
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(150 residues)
|
|
|
|
Bound ligands:
|
Het Group ATP
corresponds to
enzyme reactant ATP
|
|
|
Het Group ATP
corresponds to
enzyme reactant ATP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase cryptosporidium parvum in complex with amp
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
Het Group AMP
is 85.19% similar to
enzyme product ADP
|
|
|
|
|
|
|
Crystal structure of nucleoside-diphosphate kinase cryptosporidium parvum (gmp complex)
|
|
|
Source: Cryptosporidium parvum iowa ii. Organism_taxid: 353152. Gene: cgd4_1940. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
|
|
|
Chains:
A, B, C
(149 residues)
|
|
|
|
Bound ligands:
|
Het Group 5GP
is 82.14% similar to
enzyme product ADP
|
|
|
Het Group 5GP
is 82.14% similar to
enzyme product ADP
|
|
|
|
[IntEnz]
[ExPASy]
[KEGG]
