DETAILS ON METAL

FE 501 x

The eukaryotic enzyme requires one iron atom per subunit for activity. When isolated, the iron is typically in the ferric state, while the active form is ferrous. The C. violaceum enzyme has been isolated with copper instead of iron, and this observation led to the proposal that the bacterial enzyme does not require any metal for activity (PMID 14640675).
Site type Physiological Metal
mononuclear iron

Metal in the Resting State
Oxidation
State
Coordination Geometry Coordination Number PDB
2 octahedral6
Metal in the reaction stages
Step Metal function(s) Initial-Final Oxid. states Initial-Final Geometry Initial-Final Coord. # Initial PDB Final PDB
Step 1Coordinates substrate
One electron donor
+2
-
+3
octahedral
-
octahedral
6
-
6
--
Step 2Coordinates substrate
One electron acceptor
+3
-
+2
octahedral
-
octahedral
6
-
6
--
Step 3Coordinates substrate
Electron pair donor
+2
-
+4
octahedral
-
octahedral
6
-
6
--
Step 4Coordinates substrate
Electron pair acceptor
+4
-
+2
octahedral
-
octahedral
6
-
6
--
Step 5Coordinates substrate
+2
-
+2
octahedral
-
octahedral
6
-
6
--
Step 6Not active
+2
-
+2
octahedral
-
octahedral
6
-
6
--

* N.B. There may be steps that are not described in between two annotated steps. Consequently the product species of step n may differ from the reagent species of step n+1.