This is a database for querying gene expression in mouse ES cells which accompanies the publication Single-Cell RNA-sequencing of Pluripotent States Unlocks Modular Transcriptional Variation Kolodziejczyk A.A.1,2*, Kim, J.K.2, Tsang, J2, Illicic, T. 1,2, Henriksson, J.1, Natarajan K. N.1,2, Tuck A.C.1,2, Gao X2, Bühler M3, Liu, P.2, Marioni, J.C.1,2+ and Teichmann, S.A.1,2+ Cell Stem Cell 2015

Further, the database compares our data with data from Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells (2014) Deng Q, Ramsköld D, Reinius B, Sandberg R, Science

The data were produced and made available by the Teichmann group at EMBL-EBI. Note that comparison between large numbers of genes and datasets can take a large amount of time. Click on the heatmaps to view at higher resolution. Expression levels are shown in log-2 scale, smoothed with a Gaussian kernel. Correlation is presented as Spearman ρ.

Add: Pluripotency genes


Dataset Noise for gene
Gene ID Symbol Correlation
Pubmed | ENSEMBL | Genecards



Differential expression

From: To: Show:
Gene Log Meanfrom Log Meanto Log fold change P-value Adjusted P-value

GO Noise

From: To: Show:
GO ID GO Name P-value t-score