Pairwise Sequence Alignment (PSA) is used to identify regions of similarity that may indicate functional, structural and/or evolutionary relationships between two biological sequences (protein or nucleic acid).
- PSA tool algorithms are NOT intended to produce genome synteny maps.
|Global Alignment||EMBOSS needle||Needleman-Wunsch global alignment using EMBOSS needle.|
|EMBOSS stretcher||Myers and Miller global alignment using EMBOSS stretcher.|
|EMBOSS water||Smith-Waterman local alignment using EMBOSS water.|
|EMBOSS matcher||Waterman-Eggert local alignment using EMBOSS matcher.|
|LALIGN||Huang and Miller sim local alignment using lalign.|
|Genomic Alignment||GeneWise||Comparing a protein sequence to a genomic DNA sequence.|