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Nucleotide sequence examples:

FormatNucleotide Sequences

FASTA

>ENA|BAA20512|BAA20512.1 Cyprinus carpio (common carp) alpha-globin 
ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC
AAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGAATGCTGACCGTCTACCCTCAGACC
AAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCCGGTCCTGTGAAGAAGCAT
GGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAAATAGACGACCTTGTGGGA
GGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAACTTC
AAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCTGGAGACTTCCCC
CCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTGGCTCTGGCTCTCTCTGAG
AAGTACCGCTAA
>ENA|CAA23748|CAA23748.1 Homo sapiens (human) alpha globin
ATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCG
CACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACC
AAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAAGTTAAGGGCCACGGC
AAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCG
CTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAACTTCAAG
CTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCT
GCGGTGCACGCTTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCTCCAAA
TACCGTTAA
>ENA|CAA24095|CAA24095.1 Mus musculus (house mouse) alpha-globin
ATGGTGCTCTCTGGGGAAGACAAAAGCAACATCAAGGCTGCCTGGGGGAAGATTGGTGGC
CATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTTGCTAGCTTCCCCACCACC
AAGACCTACTTTCCTCACTTTGATGTAAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGC
AAGAAGGTCGCCGATGCGCTGGCCAGTGCTGCAGGCCACCTCGATGACCTGCCCGGTGCC
TTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTGTGGATCCCGTCAACTTCAAG
CTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACCCTGCCGATTTCACCCCC
GCGGTACATGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACCGTGCTGACCTCCAAG
TACCGTTAA
>ENA|CAA28435|CAA28435.1 Capra hircus (goat) alpha-globin
ATGTCTCTGACCAGGACTGAGAGGACCATCATCCTGTCCCTGTGGAGCAAGATCTCCACA
CAGGCAGACGTCATTGGCACCGAGACCCTGGAGAGGCTCTTCTCCTGCTACCCGCAGGCC
AAGACCTACTTCCCGCACTTCGACCTGCACTCGGGCTCCGCGCAGCTGCGCGCGCACGGC
TCCAAGGTGGTGGCCGCCGTGGGCGACGCGGTCAAGAGCATCGACAACGTGACGAGCGCG
CTGTCCAAGCTGAGCGAGCTGCACGCCTACGTGCTGCGCGTGGACCCGGTCAACTTCAAG
TTCCTGTCCCACTGCCTGCTGGTCACGTTGGCCTCGCACTTCCCCGCCGACTTCACGGCC
GACGCGCACGCCGCCTGGGACAAGTTCCTGTCCATCGTGTCCGGCGTCCTGACGGAGAAG
TACCGCTGA

GCG

!!NA_SEQUENCE 1.0

Cyprinus carpio (common carp) alpha-globin 

BAA20512.1  Length: 432  Type: N  Check: 1127 ..

   1 ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA

  51 GATCAGCCCC AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC

 101 TGACCGTCTA CCCTCAGACC AAGACCTACT TCGCTCACTG GGATGACCTG

 151 AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT GGCAAGGTTA TCATGGGTGC

 201 AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA GGTCTGGCCT

 251 CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC

 301 AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG

 351 AGACTTCCCC CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT

 401 TGGCTCTGGC TCTCTCTGAG AAGTACCGCT AA

!!NA_SEQUENCE 1.0

Homo sapiens (human) alpha globin 

CAA23748.1  Length: 429  Type: N  Check: 4904 ..

   1 ATGGTGCTGT CTCCTGCCGA CAAGACCAAC GTCAAGGCCG CCTGGGGTAA

  51 GGTCGGCGCG CACGCTGGCG AGTATGGTGC GGAGGCCCTG GAGAGGATGT

 101 TCCTGTCCTT CCCCACCACC AAGACCTACT TCCCGCACTT CGACCTGAGC

 151 CACGGCTCTG CCCAAGTTAA GGGCCACGGC AAGAAGGTGG CCGACGCGCT

 201 GACCAACGCC GTGGCGCACG TGGACGACAT GCCCAACGCG CTGTCCGCCC

 251 TGAGCGACCT GCACGCGCAC AAGCTTCGGG TGGACCCGGT CAACTTCAAG

 301 CTCCTAAGCC ACTGCCTGCT GGTGACCCTG GCCGCCCACC TCCCCGCCGA

 351 GTTCACCCCT GCGGTGCACG CTTCCCTGGA CAAGTTCCTG GCTTCTGTGA

 401 GCACCGTGCT GACCTCCAAA TACCGTTAA

!!NA_SEQUENCE 1.0

Mus musculus (house mouse) alpha-globin 

CAA24095.1  Length: 429  Type: N  Check: 1269 ..

   1 ATGGTGCTCT CTGGGGAAGA CAAAAGCAAC ATCAAGGCTG CCTGGGGGAA

  51 GATTGGTGGC CATGGTGCTG AATATGGAGC TGAAGCCCTG GAAAGGATGT

 101 TTGCTAGCTT CCCCACCACC AAGACCTACT TTCCTCACTT TGATGTAAGC

 151 CACGGCTCTG CCCAGGTCAA GGGTCACGGC AAGAAGGTCG CCGATGCGCT

 201 GGCCAGTGCT GCAGGCCACC TCGATGACCT GCCCGGTGCC TTGTCTGCTC

 251 TGAGCGACCT GCATGCCCAC AAGCTGCGTG TGGATCCCGT CAACTTCAAG

 301 CTCCTGAGCC ACTGCCTGCT GGTGACCTTG GCTAGCCACC ACCCTGCCGA

 351 TTTCACCCCC GCGGTACATG CCTCTCTGGA CAAATTCCTT GCCTCTGTGA

 401 GCACCGTGCT GACCTCCAAG TACCGTTAA

!!NA_SEQUENCE 1.0

Capra hircus (goat) alpha-globin 

CAA28435.1  Length: 429  Type: N  Check: 5655 ..

   1 ATGTCTCTGA CCAGGACTGA GAGGACCATC ATCCTGTCCC TGTGGAGCAA

  51 GATCTCCACA CAGGCAGACG TCATTGGCAC CGAGACCCTG GAGAGGCTCT

 101 TCTCCTGCTA CCCGCAGGCC AAGACCTACT TCCCGCACTT CGACCTGCAC

 151 TCGGGCTCCG CGCAGCTGCG CGCGCACGGC TCCAAGGTGG TGGCCGCCGT

 201 GGGCGACGCG GTCAAGAGCA TCGACAACGT GACGAGCGCG CTGTCCAAGC

 251 TGAGCGAGCT GCACGCCTAC GTGCTGCGCG TGGACCCGGT CAACTTCAAG

 301 TTCCTGTCCC ACTGCCTGCT GGTCACGTTG GCCTCGCACT TCCCCGCCGA

 351 CTTCACGGCC GACGCGCACG CCGCCTGGGA CAAGTTCCTG TCCATCGTGT

 401 CCGGCGTCCT GACGGAGAAG TACCGCTGA

EMBL (abridged version)


ID BAA20512.1; SV 1; linear; unassigned DNA; STD; UNC; 432 BP.
XX
DE Cyprinus carpio (common carp) alpha-globin
XX
XX
SQ Sequence 432 BP; 97 A; 122 C; 111 G; 102 T; 0 other;
ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA GATCAGCCCC 60
AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC TGACCGTCTA CCCTCAGACC 120
AAGACCTACT TCGCTCACTG GGATGACCTG AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT 180
GGCAAGGTTA TCATGGGTGC AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA 240
GGTCTGGCCT CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC 300
AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG AGACTTCCCC 360
CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT TGGCTCTGGC TCTCTCTGAG 420
AAGTACCGCT AA 432
//
ID CAA23748.1; SV 1; linear; unassigned DNA; STD; UNC; 429 BP.
XX
DE Homo sapiens (human) alpha globin
XX
XX
SQ Sequence 429 BP; 78 A; 155 C; 121 G; 75 T; 0 other;
ATGGTGCTGT CTCCTGCCGA CAAGACCAAC GTCAAGGCCG CCTGGGGTAA GGTCGGCGCG 60
CACGCTGGCG AGTATGGTGC GGAGGCCCTG GAGAGGATGT TCCTGTCCTT CCCCACCACC 120
AAGACCTACT TCCCGCACTT CGACCTGAGC CACGGCTCTG CCCAAGTTAA GGGCCACGGC 180
AAGAAGGTGG CCGACGCGCT GACCAACGCC GTGGCGCACG TGGACGACAT GCCCAACGCG 240
CTGTCCGCCC TGAGCGACCT GCACGCGCAC AAGCTTCGGG TGGACCCGGT CAACTTCAAG 300
CTCCTAAGCC ACTGCCTGCT GGTGACCCTG GCCGCCCACC TCCCCGCCGA GTTCACCCCT 360
GCGGTGCACG CTTCCCTGGA CAAGTTCCTG GCTTCTGTGA GCACCGTGCT GACCTCCAAA 420
TACCGTTAA 429
//
ID CAA24095.1; SV 1; linear; unassigned DNA; STD; UNC; 429 BP.
XX
DE Mus musculus (house mouse) alpha-globin
XX
XX
SQ Sequence 429 BP; 86 A; 135 C; 114 G; 94 T; 0 other;
ATGGTGCTCT CTGGGGAAGA CAAAAGCAAC ATCAAGGCTG CCTGGGGGAA GATTGGTGGC 60
CATGGTGCTG AATATGGAGC TGAAGCCCTG GAAAGGATGT TTGCTAGCTT CCCCACCACC 120
AAGACCTACT TTCCTCACTT TGATGTAAGC CACGGCTCTG CCCAGGTCAA GGGTCACGGC 180
AAGAAGGTCG CCGATGCGCT GGCCAGTGCT GCAGGCCACC TCGATGACCT GCCCGGTGCC 240
TTGTCTGCTC TGAGCGACCT GCATGCCCAC AAGCTGCGTG TGGATCCCGT CAACTTCAAG 300
CTCCTGAGCC ACTGCCTGCT GGTGACCTTG GCTAGCCACC ACCCTGCCGA TTTCACCCCC 360
GCGGTACATG CCTCTCTGGA CAAATTCCTT GCCTCTGTGA GCACCGTGCT GACCTCCAAG 420
TACCGTTAA 429
//
ID CAA28435.1; SV 1; linear; unassigned DNA; STD; UNC; 429 BP.
XX
DE Capra hircus (goat) alpha-globin
XX
XX
SQ Sequence 429 BP; 75 A; 153 C; 124 G; 77 T; 0 other;
ATGTCTCTGA CCAGGACTGA GAGGACCATC ATCCTGTCCC TGTGGAGCAA GATCTCCACA 60
CAGGCAGACG TCATTGGCAC CGAGACCCTG GAGAGGCTCT TCTCCTGCTA CCCGCAGGCC 120
AAGACCTACT TCCCGCACTT CGACCTGCAC TCGGGCTCCG CGCAGCTGCG CGCGCACGGC 180
TCCAAGGTGG TGGCCGCCGT GGGCGACGCG GTCAAGAGCA TCGACAACGT GACGAGCGCG 240
CTGTCCAAGC TGAGCGAGCT GCACGCCTAC GTGCTGCGCG TGGACCCGGT CAACTTCAAG 300
TTCCTGTCCC ACTGCCTGCT GGTCACGTTG GCCTCGCACT TCCCCGCCGA CTTCACGGCC 360
GACGCGCACG CCGCCTGGGA CAAGTTCCTG TCCATCGTGT CCGGCGTCCT GACGGAGAAG 420
TACCGCTGA 429
//

GenBank (abridged version)


LOCUS BAA20512.1 432 bp DNA linear UNC 20-APR-2017
DEFINITION Cyprinus carpio (common carp) alpha-globin .
ORIGIN
1 ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA GATCAGCCCC
61 AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC TGACCGTCTA CCCTCAGACC
121 AAGACCTACT TCGCTCACTG GGATGACCTG AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT
181 GGCAAGGTTA TCATGGGTGC AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA
241 GGTCTGGCCT CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC
301 AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG AGACTTCCCC
361 CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT TGGCTCTGGC TCTCTCTGAG
421 AAGTACCGCT AA
//
LOCUS CAA23748.1 429 bp DNA linear UNC 20-APR-2017
DEFINITION Homo sapiens (human) alpha globin .
ORIGIN
1 ATGGTGCTGT CTCCTGCCGA CAAGACCAAC GTCAAGGCCG CCTGGGGTAA GGTCGGCGCG
61 CACGCTGGCG AGTATGGTGC GGAGGCCCTG GAGAGGATGT TCCTGTCCTT CCCCACCACC
121 AAGACCTACT TCCCGCACTT CGACCTGAGC CACGGCTCTG CCCAAGTTAA GGGCCACGGC
181 AAGAAGGTGG CCGACGCGCT GACCAACGCC GTGGCGCACG TGGACGACAT GCCCAACGCG
241 CTGTCCGCCC TGAGCGACCT GCACGCGCAC AAGCTTCGGG TGGACCCGGT CAACTTCAAG
301 CTCCTAAGCC ACTGCCTGCT GGTGACCCTG GCCGCCCACC TCCCCGCCGA GTTCACCCCT
361 GCGGTGCACG CTTCCCTGGA CAAGTTCCTG GCTTCTGTGA GCACCGTGCT GACCTCCAAA
421 TACCGTTAA
//
LOCUS CAA24095.1 429 bp DNA linear UNC 20-APR-2017
DEFINITION Mus musculus (house mouse) alpha-globin .
ORIGIN
1 ATGGTGCTCT CTGGGGAAGA CAAAAGCAAC ATCAAGGCTG CCTGGGGGAA GATTGGTGGC
61 CATGGTGCTG AATATGGAGC TGAAGCCCTG GAAAGGATGT TTGCTAGCTT CCCCACCACC
121 AAGACCTACT TTCCTCACTT TGATGTAAGC CACGGCTCTG CCCAGGTCAA GGGTCACGGC
181 AAGAAGGTCG CCGATGCGCT GGCCAGTGCT GCAGGCCACC TCGATGACCT GCCCGGTGCC
241 TTGTCTGCTC TGAGCGACCT GCATGCCCAC AAGCTGCGTG TGGATCCCGT CAACTTCAAG
301 CTCCTGAGCC ACTGCCTGCT GGTGACCTTG GCTAGCCACC ACCCTGCCGA TTTCACCCCC
361 GCGGTACATG CCTCTCTGGA CAAATTCCTT GCCTCTGTGA GCACCGTGCT GACCTCCAAG
421 TACCGTTAA
//
LOCUS CAA28435.1 429 bp DNA linear UNC 20-APR-2017
DEFINITION Capra hircus (goat) alpha-globin .
ORIGIN
1 ATGTCTCTGA CCAGGACTGA GAGGACCATC ATCCTGTCCC TGTGGAGCAA GATCTCCACA
61 CAGGCAGACG TCATTGGCAC CGAGACCCTG GAGAGGCTCT TCTCCTGCTA CCCGCAGGCC
121 AAGACCTACT TCCCGCACTT CGACCTGCAC TCGGGCTCCG CGCAGCTGCG CGCGCACGGC
181 TCCAAGGTGG TGGCCGCCGT GGGCGACGCG GTCAAGAGCA TCGACAACGT GACGAGCGCG
241 CTGTCCAAGC TGAGCGAGCT GCACGCCTAC GTGCTGCGCG TGGACCCGGT CAACTTCAAG
301 TTCCTGTCCC ACTGCCTGCT GGTCACGTTG GCCTCGCACT TCCCCGCCGA CTTCACGGCC
361 GACGCGCACG CCGCCTGGGA CAAGTTCCTG TCCATCGTGT CCGGCGTCCT GACGGAGAAG
421 TACCGCTGA
//

PIR / NBRF


>D1;BAA20512.1
Cyprinus carpio (common carp) alpha-globin , 432 bases
ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA
GATCAGCCCC AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC
TGACCGTCTA CCCTCAGACC AAGACCTACT TCGCTCACTG GGATGACCTG
AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT GGCAAGGTTA TCATGGGTGC
AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA GGTCTGGCCT
CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC
AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG
AGACTTCCCC CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT
TGGCTCTGGC TCTCTCTGAG AAGTACCGCT AA*

>D1;CAA23748.1
Homo sapiens (human) alpha globin , 429 bases
ATGGTGCTGT CTCCTGCCGA CAAGACCAAC GTCAAGGCCG CCTGGGGTAA
GGTCGGCGCG CACGCTGGCG AGTATGGTGC GGAGGCCCTG GAGAGGATGT
TCCTGTCCTT CCCCACCACC AAGACCTACT TCCCGCACTT CGACCTGAGC
CACGGCTCTG CCCAAGTTAA GGGCCACGGC AAGAAGGTGG CCGACGCGCT
GACCAACGCC GTGGCGCACG TGGACGACAT GCCCAACGCG CTGTCCGCCC
TGAGCGACCT GCACGCGCAC AAGCTTCGGG TGGACCCGGT CAACTTCAAG
CTCCTAAGCC ACTGCCTGCT GGTGACCCTG GCCGCCCACC TCCCCGCCGA
GTTCACCCCT GCGGTGCACG CTTCCCTGGA CAAGTTCCTG GCTTCTGTGA
GCACCGTGCT GACCTCCAAA TACCGTTAA*

>D1;CAA24095.1
Mus musculus (house mouse) alpha-globin , 429 bases
ATGGTGCTCT CTGGGGAAGA CAAAAGCAAC ATCAAGGCTG CCTGGGGGAA
GATTGGTGGC CATGGTGCTG AATATGGAGC TGAAGCCCTG GAAAGGATGT
TTGCTAGCTT CCCCACCACC AAGACCTACT TTCCTCACTT TGATGTAAGC
CACGGCTCTG CCCAGGTCAA GGGTCACGGC AAGAAGGTCG CCGATGCGCT
GGCCAGTGCT GCAGGCCACC TCGATGACCT GCCCGGTGCC TTGTCTGCTC
TGAGCGACCT GCATGCCCAC AAGCTGCGTG TGGATCCCGT CAACTTCAAG
CTCCTGAGCC ACTGCCTGCT GGTGACCTTG GCTAGCCACC ACCCTGCCGA
TTTCACCCCC GCGGTACATG CCTCTCTGGA CAAATTCCTT GCCTCTGTGA
GCACCGTGCT GACCTCCAAG TACCGTTAA*

>D1;CAA28435.1
Capra hircus (goat) alpha-globin , 429 bases
ATGTCTCTGA CCAGGACTGA GAGGACCATC ATCCTGTCCC TGTGGAGCAA
GATCTCCACA CAGGCAGACG TCATTGGCAC CGAGACCCTG GAGAGGCTCT
TCTCCTGCTA CCCGCAGGCC AAGACCTACT TCCCGCACTT CGACCTGCAC
TCGGGCTCCG CGCAGCTGCG CGCGCACGGC TCCAAGGTGG TGGCCGCCGT
GGGCGACGCG GTCAAGAGCA TCGACAACGT GACGAGCGCG CTGTCCAAGC
TGAGCGAGCT GCACGCCTAC GTGCTGCGCG TGGACCCGGT CAACTTCAAG
TTCCTGTCCC ACTGCCTGCT GGTCACGTTG GCCTCGCACT TCCCCGCCGA
CTTCACGGCC GACGCGCACG CCGCCTGGGA CAAGTTCCTG TCCATCGTGT
CCGGCGTCCT GACGGAGAAG TACCGCTGA*

PHYLIP


4 432
BAA20512.1ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA
          GATCAGCCCC AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC
          TGACCGTCTA CCCTCAGACC AAGACCTACT TCGCTCACTG GGATGACCTG
          AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT GGCAAGGTTA TCATGGGTGC
          AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA GGTCTGGCCT
          CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC
          AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG
          AGACTTCCCC CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT
          TGGCTCTGGC TCTCTCTGAG AAGTACCGCT AA
CAA23748.1ATGGTGCTGT CTCCTGCCGA CAAGACCAAC GTCAAGGCCG CCTGGGGTAA
          GGTCGGCGCG CACGCTGGCG AGTATGGTGC GGAGGCCCTG GAGAGGATGT
          TCCTGTCCTT CCCCACCACC AAGACCTACT TCCCGCACTT CGACCTGAGC
          CACGGCTCTG CCCAAGTTAA GGGCCACGGC AAGAAGGTGG CCGACGCGCT
          GACCAACGCC GTGGCGCACG TGGACGACAT GCCCAACGCG CTGTCCGCCC
          TGAGCGACCT GCACGCGCAC AAGCTTCGGG TGGACCCGGT CAACTTCAAG
          CTCCTAAGCC ACTGCCTGCT GGTGACCCTG GCCGCCCACC TCCCCGCCGA
          GTTCACCCCT GCGGTGCACG CTTCCCTGGA CAAGTTCCTG GCTTCTGTGA
          GCACCGTGCT GACCTCCAAA TACCGTTAA
CAA24095.1ATGGTGCTCT CTGGGGAAGA CAAAAGCAAC ATCAAGGCTG CCTGGGGGAA
          GATTGGTGGC CATGGTGCTG AATATGGAGC TGAAGCCCTG GAAAGGATGT
          TTGCTAGCTT CCCCACCACC AAGACCTACT TTCCTCACTT TGATGTAAGC
          CACGGCTCTG CCCAGGTCAA GGGTCACGGC AAGAAGGTCG CCGATGCGCT
          GGCCAGTGCT GCAGGCCACC TCGATGACCT GCCCGGTGCC TTGTCTGCTC
          TGAGCGACCT GCATGCCCAC AAGCTGCGTG TGGATCCCGT CAACTTCAAG
          CTCCTGAGCC ACTGCCTGCT GGTGACCTTG GCTAGCCACC ACCCTGCCGA
          TTTCACCCCC GCGGTACATG CCTCTCTGGA CAAATTCCTT GCCTCTGTGA
          GCACCGTGCT GACCTCCAAG TACCGTTAA
CAA28435.1ATGTCTCTGA CCAGGACTGA GAGGACCATC ATCCTGTCCC TGTGGAGCAA
          GATCTCCACA CAGGCAGACG TCATTGGCAC CGAGACCCTG GAGAGGCTCT
          TCTCCTGCTA CCCGCAGGCC AAGACCTACT TCCCGCACTT CGACCTGCAC
          TCGGGCTCCG CGCAGCTGCG CGCGCACGGC TCCAAGGTGG TGGCCGCCGT
          GGGCGACGCG GTCAAGAGCA TCGACAACGT GACGAGCGCG CTGTCCAAGC
          TGAGCGAGCT GCACGCCTAC GTGCTGCGCG TGGACCCGGT CAACTTCAAG
          TTCCTGTCCC ACTGCCTGCT GGTCACGTTG GCCTCGCACT TCCCCGCCGA
          CTTCACGGCC GACGCGCACG CCGCCTGGGA CAAGTTCCTG TCCATCGTGT
          CCGGCGTCCT GACGGAGAAG TACCGCTGA


Protein sequence examples:

FormatProtein Sequences

FASTA


>tr|O13169|O13169_CYPCA Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1
MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
PEVHMSVDKFFQNLALALSEKYR
>sp|P69905|HBA_HUMAN Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2
MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
AVHASLDKFLASVSTVLTSKYR
>sp|P01942|HBA_MOUSE Hemoglobin subunit alpha OS=Mus musculus GN=Hba PE=1 SV=2
MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFDVSHGSAQVKGHG
KKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPADFTP
AVHASLDKFLASVSTVLTSKYR
>sp|P13786|HBAZ_CAPHI Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2
MSLTRTERTIILSLWSKISTQADVIGTETLERLFSCYPQAKTYFPHFDLHSGSAQLRAHG
SKVVAAVGDAVKSIDNVTSALSKLSELHAYVLRVDPVNFKFLSHCLLVTLASHFPADFTA
DAHAAWDKFLSIVSGVLTEKYR

GCG


!!AA_SEQUENCE 1.0

Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1

O13169_CYPCA  Length: 143  Type: P  Check: 4291 ..

   1 MSLSDKDKAA VKALWAKISP KADDIGAEAL GRMLTVYPQT KTYFAHWDDL

  51 SPGSGPVKKH GKVIMGAVAD AVSKIDDLVG GLASLSELHA SKLRVDPANF

 101 KILAHNVIVV IGMLFPGDFP PEVHMSVDKF FQNLALALSE KYR

!!AA_SEQUENCE 1.0

Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2

HBA_HUMAN  Length: 142  Type: P  Check: 1347 ..

   1 MVLSPADKTN VKAAWGKVGA HAGEYGAEAL ERMFLSFPTT KTYFPHFDLS

  51 HGSAQVKGHG KKVADALTNA VAHVDDMPNA LSALSDLHAH KLRVDPVNFK

 101 LLSHCLLVTL AAHLPAEFTP AVHASLDKFL ASVSTVLTSK YR

!!AA_SEQUENCE 1.0

Hemoglobin subunit alpha OS=Mus musculus GN=Hba PE=1 SV=2

HBA_MOUSE  Length: 142  Type: P  Check: 1221 ..

   1 MVLSGEDKSN IKAAWGKIGG HGAEYGAEAL ERMFASFPTT KTYFPHFDVS

  51 HGSAQVKGHG KKVADALASA AGHLDDLPGA LSALSDLHAH KLRVDPVNFK

 101 LLSHCLLVTL ASHHPADFTP AVHASLDKFL ASVSTVLTSK YR

!!AA_SEQUENCE 1.0

Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2

HBAZ_CAPHI  Length: 142  Type: P  Check: 4269 ..

   1 MSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFDLH

  51 SGSAQLRAHG SKVVAAVGDA VKSIDNVTSA LSKLSELHAY VLRVDPVNFK

 101 FLSHCLLVTL ASHFPADFTA DAHAAWDKFL SIVSGVLTEK YR

GenBank   (abridged version)


LOCUS       O13169_CYPCA             143 bp    DNA     linear   UNC 28-NOV-2017
DEFINITION  Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1.
ACCESSION   O13169
ORIGIN
       1  MSLSDKDKAA VKALWAKISP KADDIGAEAL GRMLTVYPQT KTYFAHWDDL SPGSGPVKKH
      61  GKVIMGAVAD AVSKIDDLVG GLASLSELHA SKLRVDPANF KILAHNVIVV IGMLFPGDFP
     121  PEVHMSVDKF FQNLALALSE KYR
//
LOCUS       HBA_HUMAN                142 bp    DNA     linear   UNC 28-NOV-2017
DEFINITION  Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2.
ACCESSION   P69905
ORIGIN
       1  MVLSPADKTN VKAAWGKVGA HAGEYGAEAL ERMFLSFPTT KTYFPHFDLS HGSAQVKGHG
      61  KKVADALTNA VAHVDDMPNA LSALSDLHAH KLRVDPVNFK LLSHCLLVTL AAHLPAEFTP
     121  AVHASLDKFL ASVSTVLTSK YR
//
LOCUS       HBA_MOUSE                142 bp    DNA     linear   UNC 28-NOV-2017
DEFINITION  Hemoglobin subunit alpha OS=Mus musculus GN=Hba PE=1 SV=2.
ACCESSION   P01942
ORIGIN
       1  MVLSGEDKSN IKAAWGKIGG HGAEYGAEAL ERMFASFPTT KTYFPHFDVS HGSAQVKGHG
      61  KKVADALASA AGHLDDLPGA LSALSDLHAH KLRVDPVNFK LLSHCLLVTL ASHHPADFTP
     121  AVHASLDKFL ASVSTVLTSK YR
//
LOCUS       HBAZ_CAPHI               142 bp    DNA     linear   UNC 28-NOV-2017
DEFINITION  Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2.
ACCESSION   P13786
ORIGIN
       1  MSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFDLH SGSAQLRAHG
      61  SKVVAAVGDA VKSIDNVTSA LSKLSELHAY VLRVDPVNFK FLSHCLLVTL ASHFPADFTA
     121  DAHAAWDKFL SIVSGVLTEK YR
//

PIR / NBRF


>P1;CRAB_ANAPL
ALPHA CRYSTALLIN B CHAIN (ALPHA(B)-CRYSTALLIN).
  MDITIHNPLI RRPLFSWLAP SRIFDQIFGE HLQESELLPA SPSLSPFLMR 
  SPIFRMPSWL ETGLSEMRLE KDKFSVNLDV KHFSPEELKV KVLGDMVEIH 
  GKHEERQDEH GFIAREFNRK YRIPADVDPL TITSSLSLDG VLTVSAPRKQ 
  SDVPERSIPI TREEKPAIAG AQRK*

>P1;CRAB_BOVIN
ALPHA CRYSTALLIN B CHAIN (ALPHA(B)-CRYSTALLIN).
  MDIAIHHPWI RRPFFPFHSP SRLFDQFFGE HLLESDLFPA STSLSPFYLR 
  PPSFLRAPSW IDTGLSEMRL EKDRFSVNLD VKHFSPEELK VKVLGDVIEV 
  HGKHEERQDE HGFISREFHR KYRIPADVDP LAITSSLSSD GVLTVNGPRK 
  QASGPERTIP ITREEKPAVT AAPKK*

>P1;CRAB_CHICK
ALPHA CRYSTALLIN B CHAIN (ALPHA(B)-CRYSTALLIN).
  MDITIHNPLV RRPLFSWLTP SRIFDQIFGE HLQESELLPT SPSLSPFLMR 
  SPFFRMPSWL ETGLSEMRLE KDKFSVNLDV KHFSPEELKV KVLGDMIEIH 
  GKHEERQDEH GFIAREFSRK YRIPADVDPL TITSSLSLDG VLTVSAPRKQ 
  SDVPERSIPI TREEKPAIAG SQRK*

>P1;CRAB_HUMAN
ALPHA CRYSTALLIN B CHAIN (ALPHA(B)-CRYSTALLIN) (ROSENTHAL FIBER).
  MDIAIHHPWI RRPFFPFHSP SRLFDQFFGE HLLESDLFPT STSLSPFYLR 
  PPSFLRAPSW FDTGLSEMRL EKDRFSVNLD VKHFSPEELK VKVLGDVIEV 
  HGKHEERQDE HGFISREFHR KYRIPADVDP LTITSSLSSD GVLTVNGPRK 
  QVSGPERTIP ITREEKPAVT AAPKK*

PHYLIP


4 143
O13169_CYPMSLSDKDKAA VKALWAKISP KADDIGAEAL GRMLTVYPQT KTYFAHWDDL
          SPGSGPVKKH GKVIMGAVAD AVSKIDDLVG GLASLSELHA SKLRVDPANF
          KILAHNVIVV IGMLFPGDFP PEVHMSVDKF FQNLALALSE KYR
HBA_HUMAN MVLSPADKTN VKAAWGKVGA HAGEYGAEAL ERMFLSFPTT KTYFPHFDLS
          HGSAQVKGHG KKVADALTNA VAHVDDMPNA LSALSDLHAH KLRVDPVNFK
          LLSHCLLVTL AAHLPAEFTP AVHASLDKFL ASVSTVLTSK YR-
HBA_MOUSE MVLSGEDKSN IKAAWGKIGG HGAEYGAEAL ERMFASFPTT KTYFPHFDVS
          HGSAQVKGHG KKVADALASA AGHLDDLPGA LSALSDLHAH KLRVDPVNFK
          LLSHCLLVTL ASHHPADFTP AVHASLDKFL ASVSTVLTSK YR-
HBAZ_CAPHIMSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFDLH
          SGSAQLRAHG SKVVAAVGDA VKSIDNVTSA LSKLSELHAY VLRVDPVNFK
          FLSHCLLVTL ASHFPADFTA DAHAAWDKFL SIVSGVLTEK YR-

UniProtKB/Swiss-Prot (abridged version)


SQ   SEQUENCE   143 AA;  15459 MW;  9B306179848CFFB6 CRC64;
    MSLSDKDKAA VKALWAKISP KADDIGAEAL GRMLTVYPQT KTYFAHWDDL SPGSGPVKKH
     GKVIMGAVAD AVSKIDDLVG GLASLSELHA SKLRVDPANF KILAHNVIVV IGMLFPGDFP
     PEVHMSVDKF FQNLALALSE KYR
//
SQ   SEQUENCE   142 AA;  15258 MW;  15E13666573BBBAE CRC64;
     MVLSPADKTN VKAAWGKVGA HAGEYGAEAL ERMFLSFPTT KTYFPHFDLS HGSAQVKGHG
     KKVADALTNA VAHVDDMPNA LSALSDLHAH KLRVDPVNFK LLSHCLLVTL AAHLPAEFTP
     AVHASLDKFL ASVSTVLTSK YR
//
SQ   SEQUENCE   142 AA;  15085 MW;  2F70043BFF66E24A CRC64;
     MVLSGEDKSN IKAAWGKIGG HGAEYGAEAL ERMFASFPTT KTYFPHFDVS HGSAQVKGHG
     KKVADALASA AGHLDDLPGA LSALSDLHAH KLRVDPVNFK LLSHCLLVTL ASHHPADFTP
     AVHASLDKFL ASVSTVLTSK YR
//
SQ   SEQUENCE   142 AA;  15697 MW;  C7538DF9047018E8 CRC64;
     MSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFDLH SGSAQLRAHG
     SKVVAAVGDA VKSIDNVTSA LSKLSELHAY VLRVDPVNFK FLSHCLLVTL ASHFPADFTA
     DAHAAWDKFL SIVSGVLTEK YR
// 



MView and emboss_cons nucleotide input examples:

FormatOutput

Clustal w/o numbers

CLUSTAL O(1.2.4) multiple sequence alignment


ENA|BAA20512|BAA20512.1      ---------ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAG
ENA|CAA28435|CAA28435.1      ----ATGTCTCTGACCAGGACTGAGAGGACC--------------ATCATCCTGTCCCTG
ENA|CAA23748|CAA23748.1      ATGGTGCTGTCTCCTGCCGACAAGACCAACG----------------TC--AAGGCCGCC
ENA|CAA24095|CAA24095.1      ATGGTGCTCTCTGGGGAAGACAAAAGCAACA----------------TC--AAGGCTGCC
                                                         **                       * *    

ENA|BAA20512|BAA20512.1      ATCAGCCCCAAAGCCGATGATATCGGCGC---------TGAAGCTCTCGGCAGAATGCTG
ENA|CAA28435|CAA28435.1      TGGAGCAAGATCTCCACACAGGCAGACGTCATTGGCACCGAGACCCTGGAGAGGCTCTTC
ENA|CAA23748|CAA23748.1      TGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTC
ENA|CAA24095|CAA24095.1      TGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTT
                                 *              *    *  *           **  * ** *  **  *  * 

ENA|BAA20512|BAA20512.1      ACCGTCTACCCTCAGACCAAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCC
ENA|CAA28435|CAA28435.1      TCCTGCTACCCGCAGGCCAAGACCTACTTCCCGCACTTCG---ACCTGCACTCGGGCTCC
ENA|CAA23748|CAA23748.1      CTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTCG---ACCTGAGCCACGGCTCT
ENA|CAA24095|CAA24095.1      GCTAGCTTCCCCACCACCAAGACCTACTTTCCTCACTTTG---ATGTAAGCCACGGCTCT
                                  ** ***     *************  * ****  *   *  *   *   ** ** 

ENA|BAA20512|BAA20512.1      GGTCCTGTGAAGAAGCATGGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAA
ENA|CAA28435|CAA28435.1      GCGCAGCTGCGCGCGCACGGCTCCAAGGTGGTGGCCGCCGTGGGCGACGCGGTCAAGAGC
ENA|CAA23748|CAA23748.1      GCCCAAGTTAAGGGCCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCAC
ENA|CAA24095|CAA24095.1      GCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCGCTGGCCAGTGCTGCAGGCCAC
                             *  *   *       ** ***       *    *  **  **  *   ** *        

ENA|BAA20512|BAA20512.1      ATAGACGACCTTGTGGGAGGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGT
ENA|CAA28435|CAA28435.1      ATCGACAACGTGACGAGCGCGCTGTCCAAGCTGAGCGAGCTGCACGCCTACGTGCTGCGC
ENA|CAA23748|CAA23748.1      GTGGACGACATGCCCAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGG
ENA|CAA24095|CAA24095.1      CTCGATGACCTGCCCGGTGCCTTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGT
                              * **  ** *       *   ** *    ******** ** ** **   *  *** ** 

ENA|BAA20512|BAA20512.1      GTTGACCCGGCCAACTTCAAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTC
ENA|CAA28435|CAA28435.1      GTGGACCCGGTCAACTTCAAGTTCCTGTCCCACTGCCTGCTGGTCACGTTGGCCTCGCAC
ENA|CAA23748|CAA23748.1      GTGGACCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCAC
ENA|CAA24095|CAA24095.1      GTGGATCCCGTCAACTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCAC
                             ** ** ** * ********** ****    ***    *  * **     * *     * *

ENA|BAA20512|BAA20512.1      TTCCCTGGAGACTTCCCCCCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTG
ENA|CAA28435|CAA28435.1      TTCCCCGCCGACTTCACGGCCGACGCGCACGCCGCCTGGGACAAGTTCCTGTCCATCGTG
ENA|CAA23748|CAA23748.1      CTCCCCGCCGAGTTCACCCCTGCGGTGCACGCTTCCCTGGACAAGTTCCTGGCTTCTGTG
ENA|CAA24095|CAA24095.1      CACCCTGCCGATTTCACCCCCGCGGTACATGCCTCTCTGGACAAATTCCTTGCCTCTGTG
                               *** *  ** *** *  * *  *  **     *    ***** **  *        **

ENA|BAA20512|BAA20512.1      GCTCTGGCTCTCTCTGAGAAGTACCGCTAA
ENA|CAA28435|CAA28435.1      TCCGGCGTCCTGACGGAGAAGTACCGCTGA
ENA|CAA23748|CAA23748.1      AGCACCGTGCTGACCTCCAAATACCGTTAA
ENA|CAA24095|CAA24095.1      AGCACCGTGCTGACCTCCAAGTACCGTTAA
                                   *  **  *    ** ***** * *

Clustal w/ numbers


CLUSTAL O(1.2.4) multiple sequence alignment


ENA|BAA20512|BAA20512.1      ---------ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAG	51
ENA|CAA28435|CAA28435.1      ----ATGTCTCTGACCAGGACTGAGAGGACC--------------ATCATCCTGTCCCTG	42
ENA|CAA23748|CAA23748.1      ATGGTGCTGTCTCCTGCCGACAAGACCAACG----------------TC--AAGGCCGCC	42
ENA|CAA24095|CAA24095.1      ATGGTGCTCTCTGGGGAAGACAAAAGCAACA----------------TC--AAGGCTGCC	42
                                                         **                       * *    

ENA|BAA20512|BAA20512.1      ATCAGCCCCAAAGCCGATGATATCGGCGC---------TGAAGCTCTCGGCAGAATGCTG	102
ENA|CAA28435|CAA28435.1      TGGAGCAAGATCTCCACACAGGCAGACGTCATTGGCACCGAGACCCTGGAGAGGCTCTTC	102
ENA|CAA23748|CAA23748.1      TGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTC	102
ENA|CAA24095|CAA24095.1      TGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTT	102
                                 *              *    *  *           **  * ** *  **  *  * 

ENA|BAA20512|BAA20512.1      ACCGTCTACCCTCAGACCAAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCC	162
ENA|CAA28435|CAA28435.1      TCCTGCTACCCGCAGGCCAAGACCTACTTCCCGCACTTCG---ACCTGCACTCGGGCTCC	159
ENA|CAA23748|CAA23748.1      CTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTCG---ACCTGAGCCACGGCTCT	159
ENA|CAA24095|CAA24095.1      GCTAGCTTCCCCACCACCAAGACCTACTTTCCTCACTTTG---ATGTAAGCCACGGCTCT	159
                                  ** ***     *************  * ****  *   *  *   *   ** ** 

ENA|BAA20512|BAA20512.1      GGTCCTGTGAAGAAGCATGGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAA	222
ENA|CAA28435|CAA28435.1      GCGCAGCTGCGCGCGCACGGCTCCAAGGTGGTGGCCGCCGTGGGCGACGCGGTCAAGAGC	219
ENA|CAA23748|CAA23748.1      GCCCAAGTTAAGGGCCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCAC	219
ENA|CAA24095|CAA24095.1      GCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCGCTGGCCAGTGCTGCAGGCCAC	219
                             *  *   *       ** ***       *    *  **  **  *   ** *        

ENA|BAA20512|BAA20512.1      ATAGACGACCTTGTGGGAGGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGT	282
ENA|CAA28435|CAA28435.1      ATCGACAACGTGACGAGCGCGCTGTCCAAGCTGAGCGAGCTGCACGCCTACGTGCTGCGC	279
ENA|CAA23748|CAA23748.1      GTGGACGACATGCCCAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGG	279
ENA|CAA24095|CAA24095.1      CTCGATGACCTGCCCGGTGCCTTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGT	279
                              * **  ** *       *   ** *    ******** ** ** **   *  *** ** 

ENA|BAA20512|BAA20512.1      GTTGACCCGGCCAACTTCAAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTC	342
ENA|CAA28435|CAA28435.1      GTGGACCCGGTCAACTTCAAGTTCCTGTCCCACTGCCTGCTGGTCACGTTGGCCTCGCAC	339
ENA|CAA23748|CAA23748.1      GTGGACCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCAC	339
ENA|CAA24095|CAA24095.1      GTGGATCCCGTCAACTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCAC	339
                             ** ** ** * ********** ****    ***    *  * **     * *     * *

ENA|BAA20512|BAA20512.1      TTCCCTGGAGACTTCCCCCCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTG	402
ENA|CAA28435|CAA28435.1      TTCCCCGCCGACTTCACGGCCGACGCGCACGCCGCCTGGGACAAGTTCCTGTCCATCGTG	399
ENA|CAA23748|CAA23748.1      CTCCCCGCCGAGTTCACCCCTGCGGTGCACGCTTCCCTGGACAAGTTCCTGGCTTCTGTG	399
ENA|CAA24095|CAA24095.1      CACCCTGCCGATTTCACCCCCGCGGTACATGCCTCTCTGGACAAATTCCTTGCCTCTGTG	399
                               *** *  ** *** *  * *  *  **     *    ***** **  *        **

ENA|BAA20512|BAA20512.1      GCTCTGGCTCTCTCTGAGAAGTACCGCTAA	432
ENA|CAA28435|CAA28435.1      TCCGGCGTCCTGACGGAGAAGTACCGCTGA	429
ENA|CAA23748|CAA23748.1      AGCACCGTGCTGACCTCCAAATACCGTTAA	429
ENA|CAA24095|CAA24095.1      AGCACCGTGCTGACCTCCAAGTACCGTTAA	429
                                   *  **  *    ** ***** * *

Pearson / FASTA


>ENA|CAA23748|CAA23748.1 Homo sapiens (human) alpha globin
ATGGTGCTGTCTCCTG----CCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGG
CGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCAC
CACCAAGACCTACTTCCCGCACTTC---GACCTGAGCCACGGCTCTGCCCAAGTTAAGGG
CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCC
CAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTT
CACCCCTGCGGTGCACGCTTCCCTGGACAAGTT---CCTGGCTTCTGTGAGCACCGTGCT
GACCTCCAAATACCGTTAA
>ENA|CAA24095|CAA24095.1 Mus musculus (house mouse) alpha-globin
ATGGTGCTCTCTGGGGAAGACAAAAG----CAACATCAAGGCTGCCTGGGGGAAGATTGG
TGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTTGCTAGCTTCCCCAC
CACCAAGACCTACTTTCCTCACTTTGATGT---AAGCCACGGCTCTGCCCAGGTCAAGGG
TCACGGCAAGAAGGTCGCCGATGCGCTGGCCAGTGCTGCAGGCCACCTCGATGACCTGCC
CGGTGCCTTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTGTGGATCCCGTCAA
CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACCCTGCCGATTT
CACCCCCGCGGTACATGCCTCTCTGGACAAATT---CCTTGCCTCTGTGAGCACCGTGCT
GACCTCCAAGTACCGTTAA
>ENA|BAA20512|BAA20512.1 Cyprinus carpio (common carp) alpha-globin
ATGAGTCTCTCTGATAAGGACAAGGCTG----CTGTGAAAGCCCTATGGGCTAAGATCAG
CCCCAAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGAATGCTGACCGTCTACCCTCA
GACCAAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCCGGTCCTGTGAAGAA
GCATGGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAAATAGACGACCTTGT
GGGAGGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAA
CTTCAAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCTGGAGACTT
CCCCCCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAAC---TTGGCTCTGGCTCT
CTCTGAGAAGTACCGCTAA
>ENA|CAA28435|CAA28435.1 Capra hircus (goat) alpha-globin
----ATGTCTCTGACCAGGACTGAGAGGACCATCATCCTGTCCCTGTGGAGCAAGATCTC
CACACAGGCAGACGTCATTGGCACCGAGACCCTGGAGAGGCTCTTCTCCTGCTACCCGCA
GGCCAAGACCTACTTCCCGCACTTC---GACCTGCACTCGGGCTCCGCGCAGCTGCGCGC
GCACGGCTCCAAGGTGGTGGCCGCCGTGGGCGACGCGGTCAAGAGCATCGACAACGTGAC
GAGCGCGCTGTCCAAGCTGAGCGAGCTGCACGCCTACGTGCTGCGCGTGGACCCGGTCAA
CTTCAAGTTCCTGTCCCACTGCCTGCTGGTCACGTTGGCCTCGCACTTCCCCGCCGACTT
CACGGCCGACGCGCACGCCGCCTGGGACAAGTT---CCTGTCCATCGTGTCCGGCGTCCT
GACGGAGAAGTACCGCTGA

PIR

>D1;CAA23748.1
Homo sapiens (human) alpha globin, 439 bases
 ATGGTGCTGT CTCCTG---- CCGACAAGAC CAACGTCAAG GCCGCCTGGG
 GTAAGGTCGG CGCGCACGCT GGCGAGTATG GTGCGGAGGC CCTGGAGAGG
 ATGTTCCTGT CCTTCCCCAC CACCAAGACC TACTTCCCGC ACTTC---GA
 CCTGAGCCAC GGCTCTGCCC AAGTTAAGGG CCACGGCAAG AAGGTGGCCG
 ACGCGCTGAC CAACGCCGTG GCGCACGTGG ACGACATGCC CAACGCGCTG
 TCCGCCCTGA GCGACCTGCA CGCGCACAAG CTTCGGGTGG ACCCGGTCAA
 CTTCAAGCTC CTAAGCCACT GCCTGCTGGT GACCCTGGCC GCCCACCTCC
 CCGCCGAGTT CACCCCTGCG GTGCACGCTT CCCTGGACAA GTT---CCTG
 GCTTCTGTGA GCACCGTGCT GACCTCCAAA TACCGTTAA*

>D1;CAA24095.1
Mus musculus (house mouse) alpha-globin, 439 bases
 ATGGTGCTCT CTGGGGAAGA CAAAAG---- CAACATCAAG GCTGCCTGGG
 GGAAGATTGG TGGCCATGGT GCTGAATATG GAGCTGAAGC CCTGGAAAGG
 ATGTTTGCTA GCTTCCCCAC CACCAAGACC TACTTTCCTC ACTTTGATGT
 ---AAGCCAC GGCTCTGCCC AGGTCAAGGG TCACGGCAAG AAGGTCGCCG
 ATGCGCTGGC CAGTGCTGCA GGCCACCTCG ATGACCTGCC CGGTGCCTTG
 TCTGCTCTGA GCGACCTGCA TGCCCACAAG CTGCGTGTGG ATCCCGTCAA
 CTTCAAGCTC CTGAGCCACT GCCTGCTGGT GACCTTGGCT AGCCACCACC
 CTGCCGATTT CACCCCCGCG GTACATGCCT CTCTGGACAA ATT---CCTT
 GCCTCTGTGA GCACCGTGCT GACCTCCAAG TACCGTTAA*

>D1;BAA20512.1
Cyprinus carpio (common carp) alpha-globin, 439 bases
 ATGAGTCTCT CTGATAAGGA CAAGGCTG-- --CTGTGAAA GCCCTATGGG
 CTAAGATCAG CCCCAAAGCC GATGATATCG GCGCTGAAGC TCTCGGCAGA
 ATGCTGACCG TCTACCCTCA GACCAAGACC TACTTCGCTC ACTGGGATGA
 CCTGAGCCCT GGGTCCGGTC CTGTGAAGAA GCATGGCAAG GTTATCATGG
 GTGCAGTGGC CGATGCCGTT TCAAAAATAG ACGACCTTGT GGGAGGTCTG
 GCCTCCCTGA GCGAACTTCA TGCTTCCAAG CTGCGTGTTG ACCCGGCCAA
 CTTCAAGATC CTCGCACACA ATGTCATCGT GGTCATCGGC ATGCTCTTCC
 CTGGAGACTT CCCCCCAGAG GTTCACATGT CAGTTGACAA GTTTTTCCAG
 AAC---TTGG CTCTGGCTCT CTCTGAGAAG TACCGCTAA*

>D1;CAA28435.1
Capra hircus (goat) alpha-globin, 439 bases
 ----ATGTCT CTGACCAGGA CTGAGAGGAC CATCATCCTG TCCCTGTGGA
 GCAAGATCTC CACACAGGCA GACGTCATTG GCACCGAGAC CCTGGAGAGG
 CTCTTCTCCT GCTACCCGCA GGCCAAGACC TACTTCCCGC ACTTC---GA
 CCTGCACTCG GGCTCCGCGC AGCTGCGCGC GCACGGCTCC AAGGTGGTGG
 CCGCCGTGGG CGACGCGGTC AAGAGCATCG ACAACGTGAC GAGCGCGCTG
 TCCAAGCTGA GCGAGCTGCA CGCCTACGTG CTGCGCGTGG ACCCGGTCAA
 CTTCAAGTTC CTGTCCCACT GCCTGCTGGT CACGTTGGCC TCGCACTTCC
 CCGCCGACTT CACGGCCGAC GCGCACGCCG CCTGGGACAA GTT---CCTG
 TCCATCGTGT CCGGCGTCCT GACGGAGAAG TACCGCTGA*

MSF


!!NA_MULTIPLE_ALIGNMENT 1.0

  stdout MSF: 439 Type: N 26/01/18 CompCheck: 7409 ..

  Name: CAA23748.1 Len: 439  Check:  968 Weight: 1.00
  Name: CAA24095.1 Len: 439  Check: 5416 Weight: 1.00
  Name: BAA20512.1 Len: 439  Check: 5697 Weight: 1.00
  Name: CAA28435.1 Len: 439  Check: 5328 Weight: 1.00

//

           1                                               50
CAA23748.1 ATGGTGCTGTCTCCTG....CCGACAAGACCAACGTCAAGGCCGCCTGGG
CAA24095.1 ATGGTGCTCTCTGGGGAAGACAAAAG....CAACATCAAGGCTGCCTGGG
BAA20512.1 ATGAGTCTCTCTGATAAGGACAAGGCTG....CTGTGAAAGCCCTATGGG
CAA28435.1 ~~~~ATGTCTCTGACCAGGACTGAGAGGACCATCATCCTGTCCCTGTGGA

           51                                             100
CAA23748.1 GTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGG
CAA24095.1 GGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGG
BAA20512.1 CTAAGATCAGCCCCAAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGA
CAA28435.1 GCAAGATCTCCACACAGGCAGACGTCATTGGCACCGAGACCCTGGAGAGG

           101                                            150
CAA23748.1 ATGTTCCTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTC...GA
CAA24095.1 ATGTTTGCTAGCTTCCCCACCACCAAGACCTACTTTCCTCACTTTGATGT
BAA20512.1 ATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCGCTCACTGGGATGA
CAA28435.1 CTCTTCTCCTGCTACCCGCAGGCCAAGACCTACTTCCCGCACTTC...GA

           151                                            200
CAA23748.1 CCTGAGCCACGGCTCTGCCCAAGTTAAGGGCCACGGCAAGAAGGTGGCCG
CAA24095.1 ...AAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCG
BAA20512.1 CCTGAGCCCTGGGTCCGGTCCTGTGAAGAAGCATGGCAAGGTTATCATGG
CAA28435.1 CCTGCACTCGGGCTCCGCGCAGCTGCGCGCGCACGGCTCCAAGGTGGTGG

           201                                            250
CAA23748.1 ACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCGCTG
CAA24095.1 ATGCGCTGGCCAGTGCTGCAGGCCACCTCGATGACCTGCCCGGTGCCTTG
BAA20512.1 GTGCAGTGGCCGATGCCGTTTCAAAAATAGACGACCTTGTGGGAGGTCTG
CAA28435.1 CCGCCGTGGGCGACGCGGTCAAGAGCATCGACAACGTGACGAGCGCGCTG

           251                                            300
CAA23748.1 TCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
CAA24095.1 TCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTGTGGATCCCGTCAA
BAA20512.1 GCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAA
CAA28435.1 TCCAAGCTGAGCGAGCTGCACGCCTACGTGCTGCGCGTGGACCCGGTCAA

           301                                            350
CAA23748.1 CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCC
CAA24095.1 CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACC
BAA20512.1 CTTCAAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCC
CAA28435.1 CTTCAAGTTCCTGTCCCACTGCCTGCTGGTCACGTTGGCCTCGCACTTCC

           351                                            400
CAA23748.1 CCGCCGAGTTCACCCCTGCGGTGCACGCTTCCCTGGACAAGTT...CCTG
CAA24095.1 CTGCCGATTTCACCCCCGCGGTACATGCCTCTCTGGACAAATT...CCTT
BAA20512.1 CTGGAGACTTCCCCCCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAG
CAA28435.1 CCGCCGACTTCACGGCCGACGCGCACGCCGCCTGGGACAAGTT...CCTG

           401                                 439
CAA23748.1 GCTTCTGTGAGCACCGTGCTGACCTCCAAATACCGTTAA
CAA24095.1 GCCTCTGTGAGCACCGTGCTGACCTCCAAGTACCGTTAA
BAA20512.1 AAC...TTGGCTCTGGCTCTCTCTGAGAAGTACCGCTAA
CAA28435.1 TCCATCGTGTCCGGCGTCCTGACGGAGAAGTACCGCTGA
BLASTN 2.2.29+

Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
 
Database: em_rel
205,714,494 sequences; 244,841,441,400 total letters
 
Query= ENA|BAA20512|BAA20512.1 Cyprinus carpio (common carp) alpha-globin
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
lcl|EM_EST:EX886030 EX886030.1 CcLXBa33g15n1 ECB Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882987 EX882987.1 CcLXCa39h07n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882935 EX882935.1 CcLXCa39e18n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882689 EX882689.1 CcLXCa38j03n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882612 EX882612.1 CcLXCa38f09n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882595 EX882595.1 CcLXCa38e14n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882459 EX882459.1 CcLXCa37n21n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882335 EX882335.1 CcLXCa37i06n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882324 EX882324.1 CcLXCa37h17n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX882182 EX882182.1 CcLXCa37b02n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881837 EX881837.1 CcLXCa36b08n1 ECC Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881725 EX881725.1 CcLXBa35m06n1 ECB Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881467 EX881467.1 CcLXBa35a11n1 ECB Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881069 EX881069.1 CcLXBa33o14n1 ECB Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881001 EX881001.1 CcLXBa33l03n1 ECB Cyprinus carpio... 833 0.0
lcl|EM_EST:EX881385 EX881385.1 CcLXBa34m20n1 ECB Cyprinus carpio... 831 0.0
lcl|EM_EST:EX882667 EX882667.1 CcLXCa38h24n1 ECC Cyprinus carpio... 825 0.0
lcl|EM_EST:EX882444 EX882444.1 CcLXCa37n04n1 ECC Cyprinus carpio... 825 0.0
lcl|EM_EST:EX882325 EX882325.1 CcLXCa37h19n1 ECC Cyprinus carpio... 825 0.0
lcl|EM_EST:EX882209 EX882209.1 CcLXCa37c08n1 ECC Cyprinus carpio... 825 0.0
lcl|EM_EST:EX880976 EX880976.1 CcLXBa33k02n1 ECB Cyprinus carpio... 825 0.0
lcl|EM_EST:EX882979 EX882979.1 CcLXCa39g21n1 ECC Cyprinus carpio... 817 0.0
lcl|EM_EST:EX882932 EX882932.1 CcLXCa39e14n1 ECC Cyprinus carpio... 817 0.0
lcl|EM_EST:EX882837 EX882837.1 CcLXCa39a04n1 ECC Cyprinus carpio... 817 0.0
lcl|EM_EST:EX882532 EX882532.1 CcLXCa38b06n1 ECC Cyprinus carpio... 817 0.0
lcl|EM_EST:EX881053 EX881053.1 CcLXBa33n18n1 ECB Cyprinus carpio... 817 0.0
lcl|EM_EST:CF662214 CF662214.2 CcLX13a40p24f1 Carp mixed tissue ... 817 0.0
lcl|EM_EST:CF661656 CF661656.2 CcLX13a39b06f1 Carp mixed tissue ... 817 0.0
lcl|EM_EST:EX879922 EX879922.1 CcLXAa30j04n1 ECA Cyprinus carpio... 807 0.0
lcl|EM_EST:EX882206 EX882206.1 CcLXCa37c04n1 ECC Cyprinus carpio... 801 0.0
lcl|EM_EST:AU301019 AU301019.1 Cyprinus carpio cDNA clone: HKI-4... 801 0.0
lcl|EM_EST:AU183370 AU183370.1 Cyprinus carpio cDNA clone: H28, ... 801 0.0
lcl|EM_EST:AU183354 AU183354.1 Cyprinus carpio cDNA clone: H12, ... 801 0.0
lcl|EM_EST:EX880914 EX880914.1 CcLXBa33h09n1 ECB Cyprinus carpio... 797 0.0
lcl|EM_EST:EX886112 EX886112.1 CcLXCa38m02n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX886060 EX886060.1 CcLXCa36h09n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX883889 EX883889.1 CcLXHa46a19n1 WeyHK Cyprinus carp... 793 0.0
lcl|EM_EST:EX883080 EX883080.1 CcLXCa39l13n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX883079 EX883079.1 CcLXCa39l12n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX883060 EX883060.1 CcLXCa39k15n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX883057 EX883057.1 CcLXCa39k11n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882985 EX882985.1 CcLXCa39h04n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882947 EX882947.1 CcLXCa39f07n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882878 EX882878.1 CcLXCa39c01n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882757 EX882757.1 CcLXCa38m10n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882706 EX882706.1 CcLXCa38k01n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882698 EX882698.1 CcLXCa38j15n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882690 EX882690.1 CcLXCa38j05n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882655 EX882655.1 CcLXCa38h09n1 ECC Cyprinus carpio... 793 0.0
lcl|EM_EST:EX882631 EX882631.1 CcLXCa38g07n1 ECC Cyprinus carpio... 793 0.0

>lcl|EM_EST:EX886030 EX886030.1 CcLXBa33g15n1 ECB Cyprinus carpio cDNA clone 33g15
5' LD, mRNA sequence.
Length=688
Score = 833 bits (420), Expect = 0.0
Identities = 429/432 (99%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC 167
Query 61 AAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGAATGCTGACCGTCTACCCTCAGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGAATGCTGACCGTCTACCCTCAGACC 227
Query 121 AAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCCGGTCCTGTGAAGAAGCAT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 228 AAGACCTACTTCGCTCACTGGGCTGACCTGAGCCCTGGGTCCGGTCCTGTGAAGAAGCAT 287
Query 181 GGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAAATAGACGACCTTGTGGGA 240
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 288 GGCAAGGTTATCATGGGTGCAGTCGGCGATGCCGTTTCAAAAATAGACGACCTTGTGGGA 347
Query 241 GGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAACTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAACTTC 407
Query 301 AAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCTGGAGACTTCCCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCTGGAGACTTCCCC 467
Query 361 CCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTGGCTCTGGCTCTCTCTGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTGGCTCTGGCTCTCTCTGAG 527
Query 421 AAGTACCGCTAA 432
||||||||||||
Sbjct 528 AAGTACCGCTAA 539

>lcl|EM_EST:EX882987 EX882987.1 CcLXCa39h07n1 ECC Cyprinus carpio cDNA clone 39h07
5' LD, mRNA sequence.
Length=611
Score = 833 bits (420), Expect = 0.0
Identities = 429/432 (99%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC 143

......... output cut for brevity

FASTA Search Report

# /nfs/public/release/wp-jdispatcher/latest/appbin/linux-x86_64/fasta-36.3.7b/fasta36 -l /nfs/public/release/wp-jdispatcher/latest/data/idata/latest/fastacfg/fasta3db -L -T 8 -n -r +5/-4 -f -14 -g -4 -E "10.0 -1.0" -F 0.0 -b 50 -d 50 -m "F9 fasta-I20180115-163914-0648-98441597-p1m.m9" -z 1 @:1- +em_rel+ 6
FASTA searches a protein or DNA sequence data bank
version 36.3.7b Jun, 2015(preload9)
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: @
1>>>ENA|BAA20512|BAA20512.1 Cyprinus carpio (common carp) alpha-globin - 432 nt
Library: ENA Sequence
241444286068 residues in 205557721 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7745+/-0.000117; mu= 8.5594+/- 0.007
mean_var=88.0252+/-22.560, 0's: 6 Z-trim(111.4): 288 B-trim: 2 in 1/70
Lambda= 0.136701
statistics sampled from 60000 (85157) to 24801655 sequences
Algorithm: FASTA (3.8 Nov 2011) [optimized]
Parameters: DNA matrix (5:-4), open/ext: -14/-4
ktup: 6, E-join: 0.25 (0.192), E-opt: 0.05 (0.0783), width: 16
Scan time: 6213.510
The best scores are: opt bits E(206115194)
EM_EST:EX881837 EX881837.1 CcLXCa36b08n1 ECC C ( 584) [f] 2133 429.1 6.8e-116
EM_EST:EX881725 EX881725.1 CcLXBa35m06n1 ECB C ( 600) [f] 2133 429.1 6.8e-116
EM_EST:EX882612 EX882612.1 CcLXCa38f09n1 ECC C ( 603) [f] 2133 429.1 6.9e-116
EM_EST:EX882324 EX882324.1 CcLXCa37h17n1 ECC C ( 604) [f] 2133 429.1 6.9e-116
EM_EST:EX881467 EX881467.1 CcLXBa35a11n1 ECB C ( 605) [f] 2133 429.1 6.9e-116
EM_EST:EX882182 EX882182.1 CcLXCa37b02n1 ECC C ( 606) [f] 2133 429.1 6.9e-116
EM_EST:EX882459 EX882459.1 CcLXCa37n21n1 ECC C ( 606) [f] 2133 429.1 6.9e-116
EM_EST:EX881069 EX881069.1 CcLXBa33o14n1 ECB C ( 610) [f] 2133 429.1 6.9e-116
EM_EST:EX882987 EX882987.1 CcLXCa39h07n1 ECC C ( 611) [f] 2133 429.1 6.9e-116
EM_EST:EX882595 EX882595.1 CcLXCa38e14n1 ECC C ( 622) [f] 2133 429.1 6.9e-116
EM_EST:EX882689 EX882689.1 CcLXCa38j03n1 ECC C ( 634) [f] 2133 429.1 7e-116
EM_EST:EX881001 EX881001.1 CcLXBa33l03n1 ECB C ( 640) [f] 2133 429.1 7e-116
EM_EST:EX882935 EX882935.1 CcLXCa39e18n1 ECC C ( 648) [f] 2133 429.1 7e-116
EM_EST:EX886030 EX886030.1 CcLXBa33g15n1 ECB C ( 688) [f] 2133 429.1 7.2e-116
EM_EST:EX882335 EX882335.1 CcLXCa37i06n1 ECC C ( 879) [f] 2133 429.0 7.8e-116
EM_EST:EX881385 EX881385.1 CcLXBa34m20n1 ECB C ( 608) [f] 2128 428.1 1.4e-115
EM_EST:EX882444 EX882444.1 CcLXCa37n04n1 ECC C ( 625) [f] 2124 427.3 2.4e-115
EM_EST:EX882209 EX882209.1 CcLXCa37c08n1 ECC C ( 640) [f] 2124 427.3 2.4e-115
EM_EST:EX882325 EX882325.1 CcLXCa37h19n1 ECC C ( 640) [f] 2124 427.3 2.4e-115
EM_EST:EX882667 EX882667.1 CcLXCa38h24n1 ECC C ( 647) [f] 2124 427.3 2.4e-115
EM_EST:EX880976 EX880976.1 CcLXBa33k02n1 ECB C ( 649) [f] 2124 427.3 2.4e-115
EM_EST:CF661656 CF661656.2 CcLX13a39b06f1 Carp ( 528) [f] 2115 425.6 7.7e-115
EM_EST:EX882979 EX882979.1 CcLXCa39g21n1 ECC C ( 591) [f] 2115 425.6 8e-115
EM_EST:CF662214 CF662214.2 CcLX13a40p24f1 Carp ( 595) [f] 2115 425.6 8e-115
EM_EST:EX882932 EX882932.1 CcLXCa39e14n1 ECC C ( 601) [f] 2115 425.6 8e-115
EM_EST:EX882532 EX882532.1 CcLXCa38b06n1 ECC C ( 655) [f] 2115 425.5 8.3e-115
EM_EST:EX881053 EX881053.1 CcLXBa33n18n1 ECB C ( 667) [f] 2115 425.5 8.3e-115
EM_EST:EX882837 EX882837.1 CcLXCa39a04n1 ECC C ( 896) [f] 2115 425.4 9.2e-115
EM_EST:EX879922 EX879922.1 CcLXAa30j04n1 ECA C ( 993) [f] 2101 422.6 6.4e-114
EM_EST:AU183354 AU183354.1 Cyprinus carpio cDN ( 530) [f] 2097 422.1 9e-114
EM_EST:AU183370 AU183370.1 Cyprinus carpio cDN ( 590) [f] 2097 422.0 9.3e-114
EM_EST:AU301019 AU301019.1 Cyprinus carpio cDN ( 606) [f] 2097 422.0 9.4e-114
EM_EST:EX880914 EX880914.1 CcLXBa33h09n1 ECB C ( 718) [f] 2097 421.9 1e-113
EM_EST:EX882206 EX882206.1 CcLXCa37c04n1 ECC C ( 595) [f] 2092 421.1 1.9e-113
EM_EST:CA970244 CA970244.2 CcLL03a12e18f3 Carp ( 521) [f] 2088 420.3 3.1e-113
EM_EST:CF662000 CF662000.2 CcLX13a40d18f1 Carp ( 573) [f] 2088 420.3 3.2e-113
EM_EST:EX825026 EX825026.1 CcLXMa64b24n1 Monts ( 584) [f] 2088 420.3 3.2e-113
EM_EST:EX880672 EX880672.1 CcLXBa32l09n1 ECB C ( 585) [f] 2088 420.3 3.2e-113
EM_EST:EX881712 EX881712.1 CcLXBa35l16n1 ECB C ( 587) [f] 2088 420.3 3.2e-113
EM_EST:EX881718 EX881718.1 CcLXBa35l22n1 ECB C ( 591) [f] 2088 420.3 3.2e-113
EM_EST:EX882757 EX882757.1 CcLXCa38m10n1 ECC C ( 594) [f] 2088 420.3 3.2e-113
EM_EST:EX882017 EX882017.1 CcLXCa36j14n1 ECC C ( 595) [f] 2088 420.3 3.2e-113
EM_EST:EX881374 EX881374.1 CcLXBa34m09n1 ECB C ( 598) [f] 2088 420.3 3.2e-113
EM_EST:EX881401 EX881401.1 CcLXBa34n13n1 ECB C ( 599) [f] 2088 420.3 3.2e-113
EM_EST:EX881904 EX881904.1 CcLXCa36e08n1 ECC C ( 599) [f] 2088 420.3 3.2e-113
EM_EST:EX881591 EX881591.1 CcLXBa35g07n1 ECB C ( 600) [f] 2088 420.3 3.2e-113
EM_EST:EX882473 EX882473.1 CcLXCa37o11n1 ECC C ( 601) [f] 2088 420.3 3.2e-113
EM_EST:EX881678 EX881678.1 CcLXBa35k03n1 ECB C ( 601) [f] 2088 420.3 3.2e-113
EM_EST:EX883060 EX883060.1 CcLXCa39k15n1 ECC C ( 601) [f] 2088 420.3 3.2e-113
EM_EST:EX882361 EX882361.1 CcLXCa37j12n1 ECC C ( 601) [f] 2088 420.3 3.2e-113
>>EM_EST:EX881837 EX881837.1 CcLXCa36b08n1 ECC Cyprinus carpio
cDNA clone 36b08 5' LD, mRNA sequence. (584 nt)
initn: 2133 init1: 2133 opt: 2133 Z-score: 2267.8 bits: 429.1 E(206115194): 6.8e-116
banded Smith-Waterman score: 2133; 99.3% identity (99.3% similar) in 432 nt overlap (1-432:72-503)
                                     10          20        30
ENA|BA ATGAGTCTCTCTGATAAGGACAAGGCTGCT
::::::::::::::::::::::::::::::
EM_EST AATCTAACTTGAGAAAAAGAAGACGCAGCAATGAGTCTCTCTGATAAGGACAAGGCTGCT
50 60 70 80 90 100
              40         50       60        70        80         90
ENA|BA GTGAAAGCCCTATGGGCTAAGATCAGCCCCAAAGCCGATGATATCGGCGCTGAAGCTCTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_EST GTGAAAGCCCTATGGGCTAAGATCAGCCCCAAAGCCGATGATATCGGCGCTGAAGCTCTC
110 120 130 140 150 160
              100        110      120       130       140       150
ENA|BA GGCAGAATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCGCTCACTGGGATGACCTG
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
EM_EST GGCAGAATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCGCTCACTGGGCTGACCTG
170 180 190 200 210 220
              160        170       180      190       200       210
ENA|BA AGCCCTGGGTCCGGTCCTGTGAAGAAGCATGGCAAGGTTATCATGGGTGCAGTGGCCGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::: : ::::
EM_EST AGCCCTGGGTCCGGTCCTGTGAAGAAGCATGGCAAGGTTATCATGGGTGCAGTCGGCGAT
230 240 250 260 270 280
              220        230       240      250       260       270
ENA|BA GCCGTTTCAAAAATAGACGACCTTGTGGGAGGTCTGGCCTCCCTGAGCGAACTTCATGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_EST GCCGTTTCAAAAATAGACGACCTTGTGGGAGGTCTGGCCTCCCTGAGCGAACTTCATGCT
290 300 310 320 330 340
              280        290        300      310      320       330
ENA|BA TCCAAGCTGCGTGTTGACCCGGCCAACTTCAAGATCCTCGCACACAATGTCATCGTGGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_EST TCCAAGCTGCGTGTTGACCCGGCCAACTTCAAGATCCTCGCACACAATGTCATCGTGGTC
350 360 370 380 390 400
              340        350        360      370       380      390
ENA|BA ATCGGCATGCTCTTCCCTGGAGACTTCCCCCCAGAGGTTCACATGTCAGTTGACAAGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_EST ATCGGCATGCTCTTCCCTGGAGACTTCCCCCCAGAGGTTCACATGTCAGTTGACAAGTTT
410 420 430 440 450 460
              400        410        420      430
ENA|BA TTCCAGAACTTGGCTCTGGCTCTCTCTGAGAAGTACCGCTAA
::::::::::::::::::::::::::::::::::::::::::
EM_EST TTCCAGAACTTGGCTCTGGCTCTCTCTGAGAAGTACCGCTAAATTTCCGGTGGGCATTCA
470 480 490 500 510 520
EM_EST TACGCGACACTGTGCGGCACTCCTGACCAACTCAAGTGTGATGTCTGAATAAAATTTCTC
530 540 550 560 570 580
>>EM_EST:EX881725 EX881725.1 CcLXBa35m06n1 ECB Cyprinus carpio
cDNA clone 35m06 5' LD, mRNA sequence. (600 nt)
initn: 2133 init1: 2133 opt: 2133 Z-score: 2267.6 bits: 429.1 E(206115194): 6.8e-116
banded Smith-Waterman score: 2133; 99.3% identity (99.3% similar) in 432 nt overlap (1-432:72-503)
                                           10          20        30
ENA|BA                               ATGAGTCTCTCTGATAAGGACAAGGCTGCT
::::::::::::::::::::::::::::::
EM_EST AATCTAACTTGAGAAAAAGAAGACGCAGCAATGAGTCTCTCTGATAAGGACAAGGCTGCT
             50         60       70        80        90        100

......... output cut for brevity


MView and emboss_cons protein input examples:

FormatOutput

Clustal w/o Numbers

 tr|O13169|O13169_CYPCA      MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
sp|P69905|HBA_HUMAN         MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD-LSHGSAQVKGH
sp|P01942|HBA_MOUSE         MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFD-VSHGSAQVKGH
sp|P13786|HBAZ_CAPHI        MSLTRTERTIILSLWSKISTQADVIGTETLERLFSCYPQAKTYFPHFD-LHSGSAQLRAH
                            * *:  ::: : : *.*:. :.   *:*:* *::  :* :**** *:* :  **. :: *

tr|O13169|O13169_CYPCA      GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
sp|P69905|HBA_HUMAN         GKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFT
sp|P01942|HBA_MOUSE         GKKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPADFT
sp|P13786|HBAZ_CAPHI        GSKVVAAVGDAVKSIDNVTSALSKLSELHAYVLRVDPVNFKFLSHCLLVTLASHFPADFT
                            *. :  *: .*.  :*:: ..*: **:***  *****.***:*:* ::*.:.   *.:*

tr|O13169|O13169_CYPCA      PEVHMSVDKFFQNLALALSEKYR
sp|P69905|HBA_HUMAN         PAVHASLDKFLASVSTVLTSKYR
sp|P01942|HBA_MOUSE         PAVHASLDKFLASVSTVLTSKYR
sp|P13786|HBAZ_CAPHI        ADAHAAWDKFLSIVSGVLTEKYR
                              .* : ***:  :: .*:.***

Clustal w/ Numbers

 tr|O13169|O13169_CYPCA      MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH    60
sp|P69905|HBA_HUMAN         MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD-LSHGSAQVKGH    59
sp|P01942|HBA_MOUSE         MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFD-VSHGSAQVKGH    59
sp|P13786|HBAZ_CAPHI        MSLTRTERTIILSLWSKISTQADVIGTETLERLFSCYPQAKTYFPHFD-LHSGSAQLRAH    59
                            * *:  ::: : : *.*:. :.   *:*:* *::  :* :**** *:* :  **. :: *

tr|O13169|O13169_CYPCA      GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP    120
sp|P69905|HBA_HUMAN         GKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFT    119
sp|P01942|HBA_MOUSE         GKKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPADFT    119
sp|P13786|HBAZ_CAPHI        GSKVVAAVGDAVKSIDNVTSALSKLSELHAYVLRVDPVNFKFLSHCLLVTLASHFPADFT    119
                            *. :  *: .*.  :*:: ..*: **:***  *****.***:*:* ::*.:.   *.:*

tr|O13169|O13169_CYPCA      PEVHMSVDKFFQNLALALSEKYR    143
sp|P69905|HBA_HUMAN         PAVHASLDKFLASVSTVLTSKYR    142
sp|P01942|HBA_MOUSE         PAVHASLDKFLASVSTVLTSKYR    142
sp|P13786|HBAZ_CAPHI        ADAHAAWDKFLSIVSGVLTEKYR    142
                              .* : ***:  :: .*:.*** 

Pearson/ FASTA


>O13169_CYPCA O13169 Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1
MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
PEVHMSVDKFFQNLALALSEKYR
>HBA_HUMAN P69905 Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2
MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD-LSHGSAQVKGH
GKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFT
PAVHASLDKFLASVSTVLTSKYR
>HBA_MOUSE P01942 Hemoglobin subunit alpha OS=Mus musculus GN=Hba PE=1 SV=2
MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFD-VSHGSAQVKGH
GKKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPADFT
PAVHASLDKFLASVSTVLTSKYR
>HBAZ_CAPHI P13786 Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2
MSLTRTERTIILSLWSKISTQADVIGTETLERLFSCYPQAKTYFPHFD-LHSGSAQLRAH
GSKVVAAVGDAVKSIDNVTSALSKLSELHAYVLRVDPVNFKFLSHCLLVTLASHFPADFT
ADAHAAWDKFLSIVSGVLTEKYR

PIR

>P1;O13169_CYPCA
Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1, 143 bases
 MSLSDKDKAA VKALWAKISP KADDIGAEAL GRMLTVYPQT KTYFAHWDDL
 SPGSGPVKKH GKVIMGAVAD AVSKIDDLVG GLASLSELHA SKLRVDPANF
 KILAHNVIVV IGMLFPGDFP PEVHMSVDKF FQNLALALSE KYR*

>P1;HBA_HUMAN
Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2, 143 bases
 MVLSPADKTN VKAAWGKVGA HAGEYGAEAL ERMFLSFPTT KTYFPHFD-L
 SHGSAQVKGH GKKVADALTN AVAHVDDMPN ALSALSDLHA HKLRVDPVNF
 KLLSHCLLVT LAAHLPAEFT PAVHASLDKF LASVSTVLTS KYR*

>P1;HBA_MOUSE
Hemoglobin subunit alpha OS=Mus musculus GN=Hba PE=1 SV=2, 143 bases
 MVLSGEDKSN IKAAWGKIGG HGAEYGAEAL ERMFASFPTT KTYFPHFD-V
 SHGSAQVKGH GKKVADALAS AAGHLDDLPG ALSALSDLHA HKLRVDPVNF
 KLLSHCLLVT LASHHPADFT PAVHASLDKF LASVSTVLTS KYR*

>P1;HBAZ_CAPHI
Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2, 143 bases
 MSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFD-L
 HSGSAQLRAH GSKVVAAVGD AVKSIDNVTS ALSKLSELHA YVLRVDPVNF
 KFLSHCLLVT LASHFPADFT ADAHAAWDKF LSIVSGVLTE KYR*

MSF


!!AA_MULTIPLE_ALIGNMENT 1.0

  stdout MSF:  143 Type: P 01/12/17 CompCheck: 2090 ..

  Name: O13169_CYPCA Len: 143  Check: 4291 Weight: 1.00
  Name: HBA_HUMAN    Len: 143  Check: 5001 Weight: 1.00
  Name: HBA_MOUSE    Len: 143  Check: 4875 Weight: 1.00
  Name: HBAZ_CAPHI   Len: 143  Check: 7923 Weight: 1.00

//

           1                                               50
O13169_CYPCA MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDL
HBA_HUMAN    MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLS
HBA_MOUSE    MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHFDVS
HBAZ_CAPHI   MSLTRTERTIILSLWSKISTQADVIGTETLERLFSCYPQAKTYFPHFDLH

           51                                             100
O13169_CYPCA SPGSGPVKKHGKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANF
HBA_HUMAN    HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFK
HBA_MOUSE    HGSAQVKGHGKKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFK
HBAZ_CAPHI   SGSAQLRAHGSKVVAAVGDAVKSIDNVTSALSKLSELHAYVLRVDPVNFK

             101                                     143
O13169_CYPCA KILAHNVIVVIGMLFPGDFPPEVHMSVDKFFQNLALALSEKYR
HBA_HUMAN    LLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR~
HBA_MOUSE    LLSHCLLVTLASHHPADFTPAVHASLDKFLASVSTVLTSKYR~
HBAZ_CAPHI   FLSHCLLVTLASHFPADFTADAHAAWDKFLSIVSGVLTEKYR~
BLASTP 2.2.29+

Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
 
Database: uniprotkb
102,844,439 sequences; 34,578,617,661 total letters
 
Query= tr|O13169|O13169_CYPCA Alpha-globin OS=Cyprinus carpio GN=No.3 alpha
PE=3 SV=1
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
lcl|TR:O13169_CYPCA O13169 Alpha-globin OS=Cyprinus carpio GN=No... 286 3e-96
lcl|TR:M9V0L3_CYPCA M9V0L3 Hemoglobin alpha OS=Cyprinus carpio P... 281 2e-94
lcl|TR:M9T9S9_CYPCA M9T9S9 Hemoglobin alpha OS=Cyprinus carpio P... 279 1e-93
lcl|TR:O13136_CYPCA O13136 Alpha-globin OS=Cyprinus carpio GN=No... 277 1e-92
lcl|SP:HBA_CYPCA P02016 Hemoglobin subunit alpha OS=Cyprinus car... 275 5e-92
lcl|TR:O13139_CYPCA O13139 Alpha-globin OS=Cyprinus carpio GN=No... 273 4e-91
lcl|TR:O13138_CYPCA O13138 Alpha-globin OS=Cyprinus carpio GN=No... 269 2e-89
lcl|TR:O13135_CYPCA O13135 Alpha-globin OS=Cyprinus carpio GN=No... 268 5e-89
lcl|TR:Q8JH91_CYPCA Q8JH91 Alpha globin (Fragment) OS=Cyprinus c... 262 9e-87
lcl|TR:B0BL34_CARAU B0BL34 Hemoglobin alpha OS=Carassius auratus... 261 1e-86
lcl|TR:O13137_CYPCA O13137 Alpha-globin OS=Cyprinus carpio GN=No... 259 2e-85
lcl|SP:HBA_CARAU P02018 Hemoglobin subunit alpha OS=Carassius au... 258 2e-85
lcl|TR:Q7SZV9_DANRE Q7SZV9 Novel alpha-globin OS=Danio rerio GN=... 256 2e-84
lcl|TR:M9T843_CYPCA M9T843 Hemoglobin alpha OS=Cyprinus carpio P... 256 2e-84
lcl|TR:Q6ZM17_DANRE Q6ZM17 Novel protein similar to zebrafish he... 256 2e-84
lcl|TR:Q803Z5_DANRE Q803Z5 Hbaa1 protein OS=Danio rerio GN=hbaa1... 253 3e-83
lcl|TR:Q1JQ69_DANRE Q1JQ69 Hbaa1 protein OS=Danio rerio GN=hbaa1... 253 4e-83
lcl|SP:HBA_DANRE Q90487 Hemoglobin subunit alpha OS=Danio rerio ... 253 4e-83
lcl|TR:Q0PP67_PIMPR Q0PP67 Hemoglobin alpha chain (Fragment) OS=... 251 2e-82
lcl|TR:Q8JH90_CARAU Q8JH90 Alpha globin (Fragment) OS=Carassius ... 248 3e-81
lcl|TR:A0A0U2JYX2_MEGAM A0A0U2JYX2 Hemoglobin alpha OS=Megalobra... 248 3e-81
lcl|TR:A0A1B1UZA7_9TELE A0A1B1UZA7 Hemoglobin alpha OS=Schizopyg... 247 5e-81
lcl|TR:Q8JH84_CTEID Q8JH84 Alpha globin (Fragment) OS=Ctenophary... 244 9e-80
lcl|TR:Q8JH82_PARDA Q8JH82 Alpha globin (Fragment) OS=Paramisgur... 237 5e-77
lcl|TR:Q8JH83_MISAN Q8JH83 Alpha globin (Fragment) OS=Misgurnus ... 236 9e-77
lcl|SP:HBA_CATCL P02017 Hemoglobin subunit alpha OS=Catostomus c... 233 2e-75
lcl|TR:W5LAQ5_ASTMX W5LAQ5 Hemoglobin subunit zeta OS=Astyanax m... 229 1e-73
lcl|TR:W5LAT4_ASTMX W5LAT4 Uncharacterized protein OS=Astyanax m... 229 1e-72
lcl|TR:A1YZP4_9TELE A1YZP4 Alpha-chain hemoglobin OS=Brycon ceph... 225 3e-72
lcl|TR:W5LAN4_ASTMX W5LAN4 Hemoglobin subunit zeta OS=Astyanax m... 224 7e-72
lcl|SP:HBA_ELEEL P14520 Hemoglobin subunit alpha OS=Electrophoru... 222 4e-71
lcl|TR:A0A1S6J0W0_9TELE A0A1S6J0W0 Hemoglobin subunit alpha (Fra... 221 6e-71
lcl|TR:Q7SZV8_DANRE Q7SZV8 Novel alpha-globin OS=Danio rerio GN=... 221 2e-70
lcl|TR:A0A0F8CI88_LARCR A0A0F8CI88 Hemoglobin subunit alpha-A OS... 220 2e-70
lcl|TR:A0A087XVX5_POEFO A0A087XVX5 Hemoglobin subunit zeta OS=Po... 220 2e-70
lcl|TR:W5LAS3_ASTMX W5LAS3 Hemoglobin subunit zeta OS=Astyanax m... 220 3e-70
lcl|SP:HBAA_SERQU Q9PVM4 Hemoglobin subunit alpha-A OS=Seriola q... 219 4e-70
lcl|TR:A0A1W5A9Z6_9TELE A0A1W5A9Z6 hemoglobin embryonic subunit ... 219 6e-70
lcl|TR:A0A146MPV7_FUNHE A0A146MPV7 Hemoglobin subunit zeta OS=Fu... 219 9e-70
lcl|TR:A0A0P7ZA74_9TELE A0A0P7ZA74 Hemoglobin embryonic subunit ... 219 9e-70
lcl|TR:A0A1L6V014_DICLA A0A1L6V014 MN-Alpha1 OS=Dicentrarchus la... 218 1e-69
lcl|TR:Q7ZT21_DANRE Q7ZT21 Embryonic alpha globin e1 OS=Danio re... 218 2e-69
lcl|TR:H2LKL5_ORYLA H2LKL5 Hemoglobin embryonic subunit alpha OS... 218 2e-69
lcl|TR:A0A146VB91_FUNHE A0A146VB91 Hemoglobin subunit zeta (Frag... 219 2e-69
lcl|TR:A0A147B5Z0_FUNHE A0A147B5Z0 Hemoglobin subunit zeta OS=Fu... 218 2e-69
lcl|TR:F6P731_DANRE F6P731 Hemoglobin, alpha embryonic 1.3 (Frag... 218 3e-69
lcl|TR:A0A146ZNV6_FUNHE A0A146ZNV6 Hemoglobin subunit zeta (Frag... 219 4e-69
lcl|TR:A8KBN4_DANRE A8KBN4 Hbae1 protein OS=Danio rerio GN=hbae1... 217 5e-69
lcl|TR:W5LAK3_ASTMX W5LAK3 Hemoglobin subunit zeta OS=Astyanax m... 217 5e-69
lcl|TR:Q6Y257_PAGMA Q6Y257 Alpha hemoglobin A OS=Pagrus major PE... 216 7e-69

>lcl|TR:O13169_CYPCA O13169 Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1
Length=143
Score = 286 bits (732), Expect = 3e-96
Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH 60
MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
Sbjct 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH 60
Query 61 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP 120
GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
Sbjct 61 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP 120
Query 121 PEVHMSVDKFFQNLALALSEKYR 143
PEVHMSVDKFFQNLALALSEKYR
Sbjct 121 PEVHMSVDKFFQNLALALSEKYR 143

>lcl|TR:M9V0L3_CYPCA M9V0L3 Hemoglobin alpha OS=Cyprinus carpio PE=3 SV=1
Length=143
Score = 281 bits (720), Expect = 2e-94
Identities = 141/143 (99%), Positives = 141/143 (99%), Gaps = 0/143 (0%)
Query 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH 60
MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHW DLSPGSGPVKKH
Sbjct 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWADLSPGSGPVKKH 60
Query 61 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP 120
GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
Sbjct 61 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP 120
Query 121 PEVHMSVDKFFQNLALALSEKYR 143
PEVHMSVDKFFQNLALALSEKYR
Sbjct 121 PEVHMSVDKFFQNLALALSEKYR 143
>lcl|TR:M9V0L3_CYPCA M9V0L3 Hemoglobin alpha OS=Cyprinus carpio PE=3 SV=1
Length=143
Score = 281 bits (720), Expect = 2e-94
Identities = 141/143 (99%), Positives = 141/143 (99%), Gaps = 0/143 (0%)
Query 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH 60
MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHW DLSPGSGPVKKH
Sbjct 1 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWADLSPGSGPVKKH 60


......... output cut for brevity

FASTA Search Report



FASTA searches a protein or DNA sequence data bank
version 36.3.7b Jun, 2015(preload9)
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: @
1>>>tr|O13169|O13169_CYPCA Alpha-globin OS=Cyprinus carpio GN=No.3 alpha PE=3 SV=1 - 143 aa
Library: UniProt Knowledgebase
34578617661 residues in 102844439 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6841+/-0.000175; mu= 6.8098+/- 0.010
mean_var=59.5788+/-12.125, 0's: 162 Z-trim(118.5): 482 B-trim: 2112 in 1/61
Lambda= 0.166161
statistics sampled from 60000 (126567) to 20032730 sequences
Algorithm: FASTA (3.8 Nov 2011) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.195), width: 16
Scan time: 1221.810
The best scores are: opt bits E(102844439)
TR:O13169_CYPCA O13169 Alpha-globin OS=Cyprinus ca ( 143) 937 232.5 2.1e-58
TR:M9V0L3_CYPCA M9V0L3 Hemoglobin alpha OS=Cyprinu ( 143) 922 228.9 2.5e-57
TR:M9T9S9_CYPCA M9T9S9 Hemoglobin alpha OS=Cyprinu ( 143) 915 227.3 8.1e-57
TR:O13136_CYPCA O13136 Alpha-globin OS=Cyprinus ca ( 143) 906 225.1 3.6e-56
SP:HBA_CYPCA P02016 Hemoglobin subunit alpha OS=Cy ( 143) 901 223.9 8.3e-56
TR:O13139_CYPCA O13139 Alpha-globin OS=Cyprinus ca ( 143) 893 222.0 3.1e-55
TR:O13138_CYPCA O13138 Alpha-globin OS=Cyprinus ca ( 143) 880 218.9 2.7e-54
TR:O13135_CYPCA O13135 Alpha-globin OS=Cyprinus ca ( 143) 874 217.4 7.4e-54
TR:Q8JH91_CYPCA Q8JH91 Alpha globin (Fragment) OS= ( 143) 857 213.4 1.2e-52
TR:B0BL34_CARAU B0BL34 Hemoglobin alpha OS=Carassi ( 143) 853 212.4 2.4e-52
TR:O13137_CYPCA O13137 Alpha-globin OS=Cyprinus ca ( 143) 845 210.5 9.1e-52
SP:HBA_CARAU P02018 Hemoglobin subunit alpha OS=Ca ( 142) 842 209.8 1.5e-51
TR:M9T843_CYPCA M9T843 Hemoglobin alpha OS=Cyprinu ( 143) 834 207.9 5.7e-51
TR:Q7SZV9_DANRE Q7SZV9 Novel alpha-globin OS=Danio ( 143) 831 207.1 9.3e-51
TR:Q6ZM17_DANRE Q6ZM17 Novel protein similar to ze ( 143) 830 206.9 1.1e-50
TR:Q803Z5_DANRE Q803Z5 Hbaa1 protein OS=Danio reri ( 143) 822 205.0 4.2e-50
SP:HBA_DANRE Q90487 Hemoglobin subunit alpha OS=Da ( 143) 821 204.7 4.9e-50
TR:Q1JQ69_DANRE Q1JQ69 Hbaa1 protein OS=Danio reri ( 143) 821 204.7 4.9e-50
TR:Q0PP67_PIMPR Q0PP67 Hemoglobin alpha chain (Fra ( 142) 818 204.0 8e-50
TR:Q8JH90_CARAU Q8JH90 Alpha globin (Fragment) OS= ( 143) 811 202.3 2.6e-49
TR:A0A0U2JYX2_MEGAM A0A0U2JYX2 Hemoglobin alpha OS ( 143) 810 202.1 3.1e-49
TR:A0A1B1UZA7_9TELE A0A1B1UZA7 Hemoglobin alpha OS ( 143) 805 200.9 7e-49
TR:Q8JH84_CTEID Q8JH84 Alpha globin (Fragment) OS= ( 143) 794 198.3 4.4e-48
TR:Q8JH82_PARDA Q8JH82 Alpha globin (Fragment) OS= ( 143) 776 193.9 8.7e-47
TR:Q8JH83_MISAN Q8JH83 Alpha globin (Fragment) OS= ( 143) 770 192.5 2.4e-46
SP:HBA_CATCL P02017 Hemoglobin subunit alpha OS=Ca ( 142) 768 192.0 3.3e-46
TR:W5LAQ5_ASTMX W5LAQ5 Hemoglobin subunit zeta OS= ( 143) 747 187.0 1.1e-44
TR:W5LAT4_ASTMX W5LAT4 Uncharacterized protein OS= ( 232) 745 186.4 2.6e-44
TR:A1YZP4_9TELE A1YZP4 Alpha-chain hemoglobin OS=B ( 143) 733 183.6 1.1e-43
TR:W5LAN4_ASTMX W5LAN4 Hemoglobin subunit zeta OS= ( 143) 729 182.7 2.1e-43
TR:A0A1S6J0W0_9TELE A0A1S6J0W0 Hemoglobin subunit ( 133) 725 181.7 3.8e-43
SP:HBA_ELEEL P14520 Hemoglobin subunit alpha OS=El ( 142) 725 181.7 4.1e-43
TR:A0A0F8CI88_LARCR A0A0F8CI88 Hemoglobin subunit ( 143) 723 181.2 5.8e-43
TR:Q7SZV8_DANRE Q7SZV8 Novel alpha-globin OS=Danio ( 143) 720 180.5 9.5e-43
TR:W5LAS3_ASTMX W5LAS3 Hemoglobin subunit zeta OS= ( 143) 720 180.5 9.5e-43
SP:HBAA_SERQU Q9PVM4 Hemoglobin subunit alpha-A OS ( 143) 718 180.0 1.3e-42
TR:A0A087XVX5_POEFO A0A087XVX5 Hemoglobin subunit ( 143) 718 180.0 1.3e-42
TR:H2LKL5_ORYLA H2LKL5 Hemoglobin embryonic subuni ( 144) 716 179.6 1.9e-42
TR:A0A1W5A9Z6_9TELE A0A1W5A9Z6 hemoglobin embryoni ( 143) 713 178.8 3.1e-42
TR:A0A0P7ZA74_9TELE A0A0P7ZA74 Hemoglobin embryoni ( 154) 713 178.8 3.3e-42
TR:A0A146MPV7_FUNHE A0A146MPV7 Hemoglobin subunit ( 143) 712 178.6 3.6e-42
TR:Q7ZT21_DANRE Q7ZT21 Embryonic alpha globin e1 O ( 143) 712 178.6 3.6e-42
TR:A0A147B5Z0_FUNHE A0A147B5Z0 Hemoglobin subunit ( 143) 712 178.6 3.6e-42
TR:F6P731_DANRE F6P731 Hemoglobin, alpha embryonic ( 155) 712 178.6 3.9e-42
TR:A0A1L6V014_DICLA A0A1L6V014 MN-Alpha1 OS=Dicent ( 143) 711 178.4 4.3e-42
TR:Q6Y257_PAGMA Q6Y257 Alpha hemoglobin A OS=Pagru ( 143) 711 178.4 4.3e-42
TR:A0A146VB91_FUNHE A0A146VB91 Hemoglobin subunit ( 169) 712 178.6 4.3e-42
TR:A0A146ZNV6_FUNHE A0A146ZNV6 Hemoglobin subunit ( 189) 712 178.6 4.9e-42
TR:A0A147AC02_FUNHE A0A147AC02 Hemoglobin subunit ( 344) 715 179.2 5.8e-42
TR:W5LAK3_ASTMX W5LAK3 Hemoglobin subunit zeta OS= ( 144) 709 177.9 6e-42
>>TR:O13169_CYPCA O13169 Alpha-globin OS=Cyprinus carpio
GN=No.3 alpha PE=3 SV=1 (143 aa)
initn: 937 init1: 937 opt: 937 Z-score: 1224.9 bits: 232.5 E(102844439): 2.1e-58
Smith-Waterman score: 937; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
               10        20        30        40        50        60
tr|O13 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
TR:O13 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
               10        20        30        40        50        60
               70        80        90        100       110      120
tr|O13 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
TR:O13 GKVIMGAVADAVSKIDDLVGGLASLSELHASKLRVDPANFKILAHNVIVVIGMLFPGDFP
70 80 90 100 110 120
130 140
tr|O13 PEVHMSVDKFFQNLALALSEKYR
:::::::::::::::::::::::
TR:O13 PEVHMSVDKFFQNLALALSEKYR
130 140
>>TR:M9V0L3_CYPCA M9V0L3 Hemoglobin alpha OS=Cyprinus carpio
PE=3 SV=1 (143 aa)
initn: 922 init1: 922 opt: 922 Z-score: 1205.4 bits: 228.9 E(102844439): 2.5e-57
Smith-Waterman score: 922; 98.6% identity (99.3% similar) in 143 aa overlap (1-143:1-143)
               10        20        30        40        50        60
tr|O13 MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWDDLSPGSGPVKKH
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
TR:M9V MSLSDKDKAAVKALWAKISPKADDIGAEALGRMLTVYPQTKTYFAHWADLSPGSGPVKKH
10 20 30 40 50 60


......... output cut for brevity


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