Term: SBO:0000632

Name

sink reaction

Definition

A modeling process to provide matter influx or efflux to a model, for example to replenish a metabolic network with raw materials (eg carbon / energy sources). Such reactions are conceptual, created solely for modeling purposes, and do not have a physical correspondence. Unlike the analogous demand (SBO:....) reactions, which are usually designated as irreversible, sink reactions always represent a reversible uptake/secretion processes, and act as a metabolite source with no cost to the cell. Sink reactions, also referred to as R_SINK_, are generally used for compounds that are metabolized by the cell but are produced by non-metabolic, un-modeled cellular processes.

Synonym(s)

Comment

Created in response to 111

Reference(s)

Parent(s)

Miscellaneous

Date of creation: 19 October 2015, 12:52
Date of last modification: 20 October 2015, 13:50

History [+]