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Nature,
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Nature genetics,
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Nature genetics,
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Nature,
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Nature communications,
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Development (Cambridge, England),
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Science immunology,
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Nature cell biology,
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Science (New York, N.Y.),
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Nature biotechnology,
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Genome biology,
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Nature,
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Science (New York, N.Y.),
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Barile M, Imaz-Rosshandler I, Inzani I, Ghazanfar S, Nichols J, Marioni JC, Guibentif C, Göttgens B.
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Development (Cambridge, England),
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Nature medicine,
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Nature,
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Nature communications,
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Nature genetics,
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Nature medicine,
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Füllgrabe A, George N, Green M, Nejad P, Aronow B, Fexova SK, Fischer C, Freeberg MA, Huerta L, Morrison N, Scheuermann RH, Taylor D, Vasilevsky N, Clarke L, Gehlenborg N, Kent J, Marioni J, Teichmann S, Brazma A, Papatheodorou I.
Nature biotechnology,
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Nature,
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eLife,
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Nature immunology,
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Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang JYH.
Nature methods,
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eLife,
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Argelaguet R, Arnol D, Bredikhin D, Deloro Y, Velten B, Marioni JC, Stegle O.
Genome biology,
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Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V, Bakal C, Marioni JC, Odom DT, Gergely F.
Nature communications,
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Nature communications,
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Morgan MD, Patin E, Jagla B, Hasan M, Quintana-Murci L, Marioni JC.
PLoS genetics,
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Nature communications,
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Genome biology,
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Papatheodorou I, Moreno P, Manning J, Fuentes AM, George N, Fexova S, Fonseca NA, Füllgrabe A, Green M, Huang N, Huerta L, Iqbal H, Jianu M, Mohammed S, Zhao L, Jarnuczak AF, Jupp S, Marioni J, Meyer K, Petryszak R, Prada Medina CA, Talavera-López C, Teichmann S, Vizcaino JA, Brazma A.
Nucleic acids research,
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EMBO molecular medicine,
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Yayon N, Amsalem O, Dudai A, Yakov O, Adam G, Tessier-Lavigne M, Renier N, Segev I, London M, Soreq H.
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Shani-Narkiss H, Gilday OD, Yayon N, Landau ID.
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Rood JE, Stuart T, Ghazanfar S, Biancalani T, Fisher E, Butler A, Hupalowska A, Gaffney L, Mauck W, Eraslan G, Marioni JC, Regev A, Satija R.
Cell,
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Argelaguet R, Clark SJ, Mohammed H, Stapel LC, Krueger C, Kapourani CA, Imaz-Rosshandler I, Lohoff T, Xiang Y, Hanna CW, Smallwood S, Ibarra-Soria X, Buettner F, Sanguinetti G, Xie W, Krueger F, Göttgens B, Rugg-Gunn PJ, Kelsey G, Dean W, Nichols J, Stegle O, Marioni JC, Reik W.
Nature,
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Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang JYH.
Preprint,
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Dobie R, Wilson-Kanamori JR, Henderson BEP, Smith JR, Matchett KP, Portman JR, Wallenborg K, Picelli S, Zagorska A, Pendem SV, Hudson TE, Wu MM, Budas GR, Breckenridge DG, Harrison EM, Mole DJ, Wigmore SJ, Ramachandran P, Ponting CP, Teichmann SA, Marioni JC, Henderson NC.
Cell reports,
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Argelaguet R, Arnol D, Bredikhin D, Deloro Y, Velten B, Marioni JC, Stegle O.
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Eling N, Richard AC, Richardson S, Marioni JC, Vallejos CA.
Cell systems,
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Ramachandran P, Dobie R, Wilson-Kanamori JR, Dora EF, Henderson BEP, Luu NT, Portman JR, Matchett KP, Brice M, Marwick JA, Taylor RS, Efremova M, Vento-Tormo R, Carragher NO, Kendall TJ, Fallowfield JA, Harrison EM, Mole DJ, Wigmore SJ, Newsome PN, Weston CJ, Iredale JP, Tacke F, Pollard JW, Ponting CP, Marioni JC, Teichmann SA, Henderson NC.
Nature,
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Fleming SJ, Chaffin MD, Chaffin MD, Arduini A, Akkad A, Banks E, Marioni JC, Philippakis AA, Ellinor PT, Babadi M.
Preprint,
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Science advances,
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Haim-Vilmovsky L, Henriksson J, Walker JA, Miao Z, Natan E, Kar G, Clare S, Barlow JL, Charidemou E, Mamanova L, Chen X, Proserpio V, Pramanik J, Woodhouse S, Protasio AV, Efremova M, Griffin JL, Berriman M, Dougan G, Fisher J, Marioni JC, McKenzie AN, Teichmann SA.
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Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V, Bakal C, Marioni JC, Odom DT, Gergely F.
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Chen HC, Eling N, Martinez-Jimenez CP, O'Brien LM, Carbonaro V, Marioni JC, Odom DT, de la Roche M.
EMBO reports,
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Eling N, Morgan MD, Marioni JC.
Nature reviews. Genetics,
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Eling N, Morgan MD, Marioni JC.
Nature reviews. Genetics,
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Aztekin C, Hiscock TW, Marioni JC, Gurdon JB, Simons BD, Jullien J.
Science (New York, N.Y.),
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Cuomo AS, Seaton DD, McCarthy DJ, Martinez I, Bonder MJ, Garcia-Bernardo J, Amatya S, Madrigal P, Isaacson A, Buettner F, Knights A, Natarajan KN, HipSci Consortium, Vallier L, Marioni JC, Chhatriwala M, Stegle O.
Preprint,
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Lun ATL, Riesenfeld S, Andrews T, Dao TP, Gomes T, participants in the 1st Human Cell Atlas Jamboree, Marioni JC.
Genome biology,
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Ernst C, Eling N, Martinez-Jimenez CP, Marioni JC, Odom DT.
Nature communications,
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Pijuan-Sala B, Griffiths JA, Guibentif C, Hiscock TW, Jawaid W, Calero-Nieto FJ, Mulas C, Ibarra-Soria X, Tyser RCV, Ho DLL, Reik W, Srinivas S, Simons BD, Nichols J, Marioni JC, Göttgens B.
Nature,
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Messmer T, von Meyenn F, Savino A, Santos F, Mohammed H, Lun ATL, Marioni JC, Reik W.
Cell reports,
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Liu Q, Hua K, Zhang X, Wong WH, Jiang R.
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Strauss ME, Kirk PD, Reid JE, Wernisch L.
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Nature communications,
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Chen H, Eling N, Martinez-Jimenez CP, O’Brien LM, Marioni JC, Odom DT, la Roche Md.
Preprint,
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Laumer CE, Gruber-Vodicka H, Hadfield MG, Pearse VB, Riesgo A, Marioni JC, Giribet G.
eLife,
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Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA.
Nature methods,
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Eling N, Richard AC, Richardson S, Marioni JC, Vallejos CA.
Cell systems,
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Aitken SJ, Ibarra-Soria X, Kentepozidou E, Flicek P, Feig C, Marioni JC, Odom DT.
Genome biology,
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Richard AC, Lun ATL, Lau WWY, Göttgens B, Marioni JC, Griffiths GM.
Nature immunology,
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Griffiths JA, Richard AC, Bach K, Lun ATL, Marioni JC.
Nature communications,
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Lun ATL, Riesenfeld S, Andrews T, The Phuong Dao, Gomes T, participants in the 1st Human Cell Atlas Jamboree, Marioni JC.
Preprint,
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Ernst C, Eling N, Martinez-Jimenez CP, Marioni JC, Odom DT.
Preprint,
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Morgan MD, Marioni JC.
Genome biology,
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Do DV, Strauss B, Cukuroglu E, Macaulay I, Wee KB, Hu TX, Igor RLM, Lee C, Harrison A, Butler R, Dietmann S, Jernej U, Marioni J, Smith CWJ, Göke J, Surani MA.
Cell discovery,
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Argelaguet R, Velten B, Arnol D, Dietrich S, Zenz T, Marioni JC, Buettner F, Huber W, Stegle O.
Molecular systems biology,
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Stojic L, Lun ATL, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC, Gergely F, Odom DT.
Nucleic acids research,
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Griffiths JA, Scialdone A, Marioni JC.
Molecular systems biology,
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Haghverdi L, Lun ATL, Morgan MD, Marioni JC.
Nature biotechnology,
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Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W.
Nature communications,
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Achim K, Eling N, Vergara HM, Bertucci PY, Musser J, Vopalensky P, Brunet T, Collier P, Benes V, Marioni JC, Arendt D.
Molecular biology and evolution,
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Ibarra-Soria X, Jawaid W, Pijuan-Sala B, Ladopoulos V, Scialdone A, Jörg DJ, Tyser RCV, Calero-Nieto FJ, Mulas C, Nichols J, Vallier L, Srinivas S, Simons BD, Göttgens B, Marioni JC.
Nature cell biology,
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Hua K, Zhang X.
Preprint,
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Griffiths JA, Richard AC, Bach K, Lun AT, Marioni JC.
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Stojic L, Lun A, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC, Gergely F, Odom DT.
Preprint,
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Bach K, Pensa S, Grzelak M, Hadfield J, Adams DJ, Marioni JC, Khaled WT.
Nature communications,
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Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N, Human Cell Atlas Meeting Participants.
eLife,
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Shahbazi MN, Scialdone A, Skorupska N, Weberling A, Recher G, Zhu M, Jedrusik A, Devito LG, Noli L, Macaulay IC, Buecker C, Khalaf Y, Ilic D, Voet T, Marioni JC, Zernicka-Goetz M.
Nature,
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Griffiths JA, Scialdone A, Marioni JC.
BMC genomics,
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Welby E, Lakowski J, Di Foggia V, Budinger D, Gonzalez-Cordero A, Lun ATL, Epstein M, Patel A, Cuevas E, Kruczek K, Naeem A, Minneci F, Hubank M, Jones DT, Marioni JC, Ali RR, Sowden JC.
Stem cell reports,
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Buettner F, Pratanwanich N, McCarthy DJ, Marioni JC, Stegle O.
Genome biology,
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Wong ES, Schmitt BM, Kazachenka A, Thybert D, Redmond A, Connor F, Rayner TF, Feig C, Ferguson-Smith AC, Marioni JC, Odom DT, Flicek P.
Nature communications,
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Lun ATL, Calero-Nieto FJ, Haim-Vilmovsky L, Göttgens B, Marioni JC.
Genome research,
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Marioni JC, Arendt D.
Annual review of cell and developmental biology,
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Achim K, Eling N, Martinez Vergara H, Bertucci PY, Brunet T, Collier P, Benes V, Marioni JC, Arendt D.
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Haghverdi L, Lun ATL, Morgan MD, Marioni JC.
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Liu Y, Gonzàlez-Porta M, Santos S, Brazma A, Marioni JC, Aebersold R, Venkitaraman AR, Wickramasinghe VO.
Cell reports,
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Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W.
Cell reports,
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Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC.
Nature methods,
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Lun ATL, Richard AC, Marioni JC.
Nature methods,
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Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Triglia ET, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA.
Preprint,
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Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJT, Teichmann SA, de la Roche M, Marioni JC, Odom DT.
Science (New York, N.Y.),
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Lun ATL, Marioni JC.
Biostatistics (Oxford, England),
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Huang Y, Kim JK, Do DV, Lee C, Penfold CA, Zylicz JJ, Marioni JC, Hackett JA, Surani MA.
eLife,
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Lun ATL, Marioni JC.
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Vallejos CA, Richardson S, Marioni JC.
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Lun AT, McCarthy DJ, Marioni JC.
F1000Research,
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Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B.
Nature,
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Touloumis A, Marioni JC, Tavaré S.
Bioinformatics (Oxford, England),
2016
doi:10.1093/bioinformatics/btw224.
Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni JC, Soylemez O, Kondrashov F, Leptin M.
Open biology,
2016
doi:10.1098/rsob.160009.
Rudolph KL, Schmitt BM, Villar D, White RJ, Marioni JC, Kutter C, Odom DT.
PLoS genetics,
2016
doi:10.1371/journal.pgen.1006024.
Lun AT, Bach K, Marioni JC.
Genome biology,
2016
doi:10.1186/s13059-016-0947-7.
Vallejos CA, Richardson S, Marioni JC.
Genome biology,
2016
doi:10.1186/s13059-016-0930-3.
Goolam M, Scialdone A, Graham SJL, Macaulay IC, Jedrusik A, Hupalowska A, Voet T, Marioni JC, Zernicka-Goetz M.
Cell,
2016
doi:10.1016/j.cell.2016.01.047.
Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA.
Genome biology,
2016
doi:10.1186/s13059-016-0888-1.
Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC.
Nature communications,
2016
doi:10.1038/ncomms10415.
Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni J, Soylemez O, Kondrashov F, Leptin M.
Preprint,
2015
doi:10.1101/022061.
Saraiva LR, Ibarra-Soria X, Khan M, Omura M, Scialdone A, Mombaerts P, Marioni JC, Logan DW.
Scientific reports,
2015
doi:10.1038/srep18178.
Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC.
Nature communications,
2015
doi:10.1038/ncomms9687.
Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA.
Cell stem cell,
2015
doi:10.1016/j.stem.2015.09.011.
Wickramasinghe VO, Gonzàlez-Porta M, Perera D, Bartolozzi AR, Sibley CR, Hallegger M, Ule J, Marioni JC, Venkitaraman AR.
Genome biology,
2015
doi:10.1186/s13059-015-0749-3.
Leigh-Brown S, Goncalves A, Thybert D, Stefflova K, Watt S, Flicek P, Brazma A, Marioni JC, Odom DT.
PloS one,
2015
doi:10.1371/journal.pone.0137367.
Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F.
Methods (San Diego, Calif.),
2015
doi:10.1016/j.ymeth.2015.06.021.
Saraiva LR, Ahuja G, Ivandic I, Syed AS, Marioni JC, Korsching SI, Logan DW.
Scientific reports,
2015
doi:10.1038/srep11487.
Vallejos CA, Marioni JC, Richardson S.
PLoS computational biology,
2015
doi:10.1371/journal.pcbi.1004333.
Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA.
Molecular cell,
2015
doi:10.1016/j.molcel.2015.04.005.
Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC.
Nature biotechnology,
2015
doi:10.1038/nbt.3209.
Stegle O, Teichmann SA, Marioni JC.
Nature reviews. Genetics,
2015
doi:10.1038/nrg3833.
Touloumis A, Tavaré S, Marioni JC.
Biometrics,
2015
doi:10.1111/biom.12257.
Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O.
Nature biotechnology,
2015
doi:10.1038/nbt.3102.
Piccirillo SG, Spiteri I, Sottoriva A, Touloumis A, Ber S, Price SJ, Heywood R, Francis NJ, Howarth KD, Collins VP, Venkitaraman AR, Curtis C, Marioni JC, Tavaré S, Watts C.
Cancer research,
2014
doi:10.1158/0008-5472.can-13-3131.
Peat JR, Dean W, Clark SJ, Krueger F, Smallwood SA, Ficz G, Kim JK, Marioni JC, Hore TA, Reik W.
Cell reports,
2014
doi:10.1016/j.celrep.2014.11.034.
Scialdone A, Achim K, Marioni JC.
Genome biology,
2014
doi:10.1186/s13059-014-0496-x.
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, Watt S, Weirauch MT, Crossley M, Marioni JC, Odom DT, Flicek P, Wilson MD.
eLife,
2014
doi:10.7554/elife.02626.
Fonseca NA, Marioni J, Brazma A.
PloS one,
2014
doi:10.1371/journal.pone.0107026.
Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J.
PLoS computational biology,
2014
doi:10.1371/journal.pcbi.1003824.
Schmitt BM, Rudolph KL, Karagianni P, Fonseca NA, White RJ, Talianidis I, Odom DT, Marioni JC, Kutter C.
Genome research,
2014
doi:10.1101/gr.176784.114.
Uslu VV, Petretich M, Ruf S, Langenfeld K, Fonseca NA, Marioni JC, Spitz F.
Nature genetics,
2014
doi:10.1038/ng.2971.
Eckersley-Maslin MA, Thybert D, Bergmann JH, Marioni JC, Flicek P, Spector DL.
Developmental cell,
2014
doi:10.1016/j.devcel.2014.01.017.
Human molecular genetics,
2014
doi:10.1093/hmg/ddu495.
Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.
Nucleic acids research,
2013
doi:10.1093/nar/gkt1270.
Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG.
Nature methods,
2013
doi:10.1038/nmeth.2645.
Pettit JB, Marioni JC.
BMC bioinformatics,
2013
doi:10.1186/1471-2105-14-185.
Kim JK, Marioni JC.
Genome biology,
2013
doi:10.1186/gb-2013-14-1-r7.
Fonseca NA, Rung J, Brazma A, Marioni JC.
Bioinformatics (Oxford, England),
2012
doi:10.1093/bioinformatics/bts605.
Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC.
Genome research,
2012
doi:10.1101/gr.142281.112.
Brown LA, Hoog J, Chin SF, Tao Y, Zayed AA, Chin K, Teschendorff AE, Quackenbush JF, Marioni JC, Leung S, Perou CM, Neilsen TO, Ellis M, Gray JW, Bernard PS, Huntsman DG, Caldas C.
Nature genetics,
2008
doi:10.1038/ng0708-806.
Lynch AG, Marioni JC, Tavaré S.
American journal of human genetics,
2007
doi:10.1086/519393.