{"id":53,"date":"2022-01-12T09:35:13","date_gmt":"2022-01-12T09:35:13","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/research-beta\/finn\/?page_id=53"},"modified":"2022-01-12T14:52:14","modified_gmt":"2022-01-12T14:52:14","slug":"software","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/research\/finn\/software\/","title":{"rendered":"Software"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<p><a rel=\"noreferrer noopener\" href=\"\/\/github.com\/Finn-Lab\/EukCC\" target=\"_blank\">EukCC<\/a>  <\/p>\n\n\n\n<p>Acompleteness and contamination estimator for metagenomic assembled microbial eukaryotic genomes.<\/p>\n\n\n\n<p><a href=\"https:\/\/github.com\/Finn-Lab\/MAG_Snakemake_wf\">MAG Snakemake <\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/Finn-Lab\/MAG_Snakemake_wf\" target=\"_blank\">Workflow<\/a> <\/p>\n\n\n\n<p>Metagenome assembled genome workflow as described in the <a href=\"https:\/\/www.nature.com\/articles\/s41596-021-00508-2?WT.mc_id=TWT_NatureProtocols\">Nature Protocols <\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/www.nature.com\/articles\/s41596-021-00508-2?WT.mc_id=TWT_NatureProtocols\" target=\"_blank\">paper<\/a><\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/EBI-Metagenomics\/emg-viral-pipeline\" target=\"_blank\">VIRify<\/a><\/p>\n\n\n\n<p>A pipeline for the detection, annotation, and taxonomic classification of viral contigs in metagenomic and metatranscriptomic assemblies.<\/p>\n\n<\/div>\n<\/div>\n\n\n<div class=\"\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<figure class=\"vf-figure wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"640\" class=\"vf-figure__image\" src=\"https:\/\/www.ebi.ac.uk\/research-beta\/finn\/wp-content\/uploads\/2022\/01\/matrix-4493783_1280-1024x640.jpeg\" alt=\"\" class=\"wp-image-79\" srcset=\"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-content\/uploads\/2022\/01\/matrix-4493783_1280-1024x640.jpeg 1024w, https:\/\/www.ebi.ac.uk\/research\/finn\/wp-content\/uploads\/2022\/01\/matrix-4493783_1280-300x188.jpeg 300w, https:\/\/www.ebi.ac.uk\/research\/finn\/wp-content\/uploads\/2022\/01\/matrix-4493783_1280-768x480.jpeg 768w, https:\/\/www.ebi.ac.uk\/research\/finn\/wp-content\/uploads\/2022\/01\/matrix-4493783_1280.jpeg 1280w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-53","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/pages\/53","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/comments?post=53"}],"version-history":[{"count":3,"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/pages\/53\/revisions"}],"predecessor-version":[{"id":80,"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/pages\/53\/revisions\/80"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/media?parent=53"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/finn\/wp-json\/wp\/v2\/embl_taxonomy?post=53"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}