{"id":70,"date":"2021-12-15T10:44:45","date_gmt":"2021-12-15T10:44:45","guid":{"rendered":"https:\/\/www.ebi.ac.uk\/research-beta\/bateman\/?page_id=70"},"modified":"2021-12-15T11:02:40","modified_gmt":"2021-12-15T11:02:40","slug":"software","status":"publish","type":"page","link":"https:\/\/www.ebi.ac.uk\/research\/bateman\/software\/","title":{"rendered":"Software"},"content":{"rendered":"\n<p>Over the years the group has developed numerous software packages and data resources.<\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td><strong>Software\/Resource<\/strong><\/td><td><strong>Description<\/strong><\/td><td><strong>Location<\/strong><\/td><\/tr><tr><td>AntiFam<\/td><td>Profile-HMM library to detect spurious protein translations<\/td><td><a href=\"ftp:\/\/ftp.ebi.ac.uk\/pub\/databases\/Pfam\/AntiFam\/README.txt\">ftp:\/\/ftp.ebi.ac.uk\/pub\/databases\/<br>Pfam\/AntiFam\/README.txt<\/a><\/td><\/tr><tr><td>Spurio<\/td><td>Software to detect spurious proteins<\/td><td><a href=\"https:\/\/bitbucket.org\/bateman-group\/spurio\/branch\/spurio_version_1.1\">https:\/\/bitbucket.org\/bateman-group\/spurio\/branch\/spurio_version_1.1<\/a><\/td><\/tr><tr><td>MEROPS<\/td><td>Database of peptidase enzymes<\/td><td><a href=\"https:\/\/www.ebi.ac.uk\/merops\/\">https:\/\/www.ebi.ac.uk\/merops\/<\/a><\/td><\/tr><tr><td>Protein-EDM<\/td><td>Software to estimate the stability of domain swap misfolding in proteins<\/td><td><a href=\"https:\/\/github.com\/lafita\/protein-edm-demo\">https:\/\/github.com\/lafita\/protein-edm-demo<\/a><\/td><\/tr><tr><td>TADOSS<\/td><td>Software to model protein structures from distance matrices using Euclidean geometry<\/td><td><a href=\"https:\/\/github.com\/lafita\/tadoss\">https:\/\/github.com\/lafita\/tadoss<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>Over the years the group has developed numerous software packages and data resources. Software\/Resource Description Location AntiFam Profile-HMM library to detect spurious protein translations ftp:\/\/ftp.ebi.ac.uk\/pub\/databases\/Pfam\/AntiFam\/README.txt Spurio Software to detect spurious proteins&hellip;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-70","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/pages\/70","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/comments?post=70"}],"version-history":[{"count":2,"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/pages\/70\/revisions"}],"predecessor-version":[{"id":75,"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/pages\/70\/revisions\/75"}],"wp:attachment":[{"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/media?parent=70"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.ebi.ac.uk\/research\/bateman\/wp-json\/wp\/v2\/embl_taxonomy?post=70"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}