BioModels documentation

Documentation for the BioModels Linked Dataset

BioModels linked data set contains all curated and non curated SBML models in the BioModels repository in RDF. Each SBML element is captured as a RDF class. The parent-child relationships between the elements and the attributes are captured using RDF properties. An additional property is introduced to capture the curated and non-curated status of each model. The diagrams below show a detailed representation of the schema.

Namespace prefixes:

  • sbmlRdf - http://identifiers.org/biomodels.vocabulary
  • bqbiol - http://biomodels.net/biology-qualifiers
  • bqmodel - http://biomodels.net/model-qualifiers

Top level class structure

toplevelclassstructure

Top level property structure

toplevelproperty

Common properties

commonProperties

SBMLModel

SBMLmodel

FunctionDef

FunctionDef

UnitsDef

UnitDef

Compartment

Compartment

Species

Species

Parameter

Parameter

Initial Assignment

initialAssignment

Rule

Rule

Constraint

Constraint

Reaction

Reaction

Event

Event