Project PXD006367

PRIDE Assigned Tags:
Biological Dataset
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Summary

Title

Cross-sectional association of salivary proteins with age, sex, body mass index, smoking, and education

Description

In a cross-sectional approach, we analyzed the influence of age, sex, body mass index (BMI), smoking, and education on salivary protein signatures in whole saliva samples of 187 individuals. Subjects were randomly selected from the population-based Study of Health in Pomerania (SHIP-Trend).

Sample Processing Protocol

- sample collection with Salivette (Sarstedt, Nümbrecht, Germany) - TCA precipitation of proteins - tryptic digestion - desalting of digests with ZipTip µC-18 - data dependent LC-MS/MS measurement on nano-UPLC/LTQ Orbitrap Velos

Data Processing Protocol

- data processing via Genedata Expressionist software package - identification via Mascot algorithm

Contact

Annette Murr, University Medicine Greifswald
Uwe Völker, Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany ( lab head )

Submission Date

24/04/2017

Publication Date

16/05/2017

Tissue

saliva

Instrument

LTQ Orbitrap Velos

Software

Not available

Quantification

Not available

Experiment Type

Shotgun proteomics

Assay count

209

Publication

    Murr A, Pink C, Hammer E, Michalik S, Dhople VM, Holtfreter B, Völker U, Kocher T, Gesell Salazar M. Cross-sectional association of salivary proteins with age, sex, body mass index, smoking, and education. J Proteome Res. 2017 May 8 PubMed: 28481548

Assay

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Showing 41 - 50 of 209 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
41 76150 139_batch6.dat-pride-filtered.xml 909 4256 2154 16102 0
42 76151 13_batch2.dat-pride-filtered.xml 1019 5303 2494 16200 0
43 76152 140_batch6.dat-pride-filtered.xml 844 4191 1947 16647 0
44 76153 141_batch6.dat-pride-filtered.xml 807 3757 1844 16743 0
45 76154 142_batchR.dat-pride-filtered.xml 919 4032 2085 17401 0
46 76034 144_batch5.dat-pride-filtered.xml 1072 5193 2579 16641 0
47 76155 145_batch5.dat-pride-filtered.xml 1112 5527 2637 16653 0
48 76035 146_batch5.dat-pride-filtered.xml 900 4301 2040 15849 0
49 76156 147_batch5.dat-pride-filtered.xml 878 4086 2011 15982 0
50 76036 148_batch5.dat-pride-filtered.xml 994 5212 2394 15971 0