Project PXD006367

PRIDE Assigned Tags:
Biological Dataset
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Summary

Title

Cross-sectional association of salivary proteins with age, sex, body mass index, smoking, and education

Description

In a cross-sectional approach, we analyzed the influence of age, sex, body mass index (BMI), smoking, and education on salivary protein signatures in whole saliva samples of 187 individuals. Subjects were randomly selected from the population-based Study of Health in Pomerania (SHIP-Trend).

Sample Processing Protocol

- sample collection with Salivette (Sarstedt, Nümbrecht, Germany) - TCA precipitation of proteins - tryptic digestion - desalting of digests with ZipTip µC-18 - data dependent LC-MS/MS measurement on nano-UPLC/LTQ Orbitrap Velos

Data Processing Protocol

- data processing via Genedata Expressionist software package - identification via Mascot algorithm

Contact

Annette Murr, University Medicine Greifswald
Uwe Völker, Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany ( lab head )

Submission Date

24/04/2017

Publication Date

16/05/2017

Tissue

saliva

Instrument

LTQ Orbitrap Velos

Software

Not available

Quantification

Not available

Experiment Type

Shotgun proteomics

Assay count

209

Publication

    Murr A, Pink C, Hammer E, Michalik S, Dhople VM, Holtfreter B, Völker U, Kocher T, Gesell Salazar M. Cross-sectional association of salivary proteins with age, sex, body mass index, smoking, and education. J Proteome Res. 2017 May 8 PubMed: 28481548

Assay

Page 1 2 3 4 5 ... 21
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Showing 11 - 20 of 209 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
11 76130 10_batch1.dat-pride-filtered.xml 666 3934 1604 15728 0
12 76131 110_batch8.dat-pride-filtered.xml 1018 4718 2401 16636 0
13 76132 111_batch8.dat-pride-filtered.xml 1111 5039 2609 17119 0
14 76133 112_batch8.dat-pride-filtered.xml 1015 4429 2330 17063 0
15 76134 113_batch8.dat-pride-filtered.xml 892 4081 2050 16332 0
16 76135 114_batch8.dat-pride-filtered.xml 1222 5526 2872 17224 0
17 76136 115_batch8.dat-pride-filtered.xml 1193 5460 2814 17030 0
18 76137 116_batch8.dat-pride-filtered.xml 833 3938 1899 16653 0
19 76138 117_batch8.dat-pride-filtered.xml 1053 5189 2537 17223 0
20 76139 118_batchR.dat-pride-filtered.xml 1160 5148 2777 17965 0