Project PXD003196

PRIDE Assigned Tags:
Biomedical Dataset
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Summary

Title

N-glyco STZ mouse kidney

Description

N-glycosylated proteome of STZ diabetic mice with diabetic nephropathy

Sample Processing Protocol

Tissue homogenization, trypsin digestion, oxidation, hydrazide capture, PNGase F release, c18 cleanup, MS

Data Processing Protocol

Raw data imported into Proteios and Progenesis, searched in Mascot against UniprotKB mouse w. rev. seq, Loess-G normalized, PCA and OPLS-DA, Hierarchical clustering, StudentĀ“s t-test

Contact

Leena Liljedahl, Department of Immunotechnology, Lund University, Sweden
Leena Liljedahl, Department of Immunotechnology, Lund University ( lab head )

Submission Date

16/11/2015

Publication Date

13/12/2016

Publication

    Liljedahl L, Pedersen MH, Norlin J, McGuire JN, James P. N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models. Clin Proteomics. 2016 Oct 15;13:22 PubMed: 27757071

Assay

Page 1 2
Page size 10
Showing 1 - 10 of 12 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
1 59312 Stz Glyco mouse kidney (4/18) 215 679 422 7037 658
2 59313 Stz Glyco mouse kidney (2/18) 233 1067 500 5623 1009
3 59314 Stz Glyco mouse kidney (7/18) 214 1009 469 4868 942
4 59315 Stz Glyco mouse kidney (6/18) 246 1079 511 5592 1004
5 59316 Stz Glyco mouse kidney (9/18) 214 669 424 5781 642
6 59317 Stz Glyco mouse kidney (8/18) 179 479 315 6591 463
7 59318 Stz Glyco mouse kidney (17/18) 208 856 428 5764 817
8 59319 Stz Glyco mouse kidney (12/18) 198 960 444 5784 887
9 59320 Stz Glyco mouse kidney (5/18) 128 307 219 6518 299
10 59321 Stz Glyco mouse kidney (3/18) 171 701 400 5339 658