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Summary

Title

Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line.

Description

The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the CCD18 cell line. 6 laboratories contributed to compile all the reported data.

Sample Processing Protocol

See details in reference(s) : 24138474

Data Processing Protocol

See details in reference(s) : 24138474

Contact

J. Alberto Medina-Aunon, Proteomics - Bioinformatics

Submission Date

04/09/2013

Publication Date

05/09/2013

Publication

    Segura V, Medina-Aunon JA, Mora MI, Martínez-Bartolomé S, Abian J, Aloria K, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, Cáceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colomé N, Dasilva N, Díaz P, Elortza F, Fernández-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, González-Tejedo C, Hernáez ML, Lombardía M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, Sánchez Del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ; Surfing Transcriptomic Landscapes. A Step beyond the Annotation of Chromosome 16 Proteome., J Proteome Res, 2013 Nov 5, PubMed: 24138474

Assay

Showing 1 - 6 of 6 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
1 31112 SPHPP_PCB_SG_CCD18_curated_FDR1_protein 3901 59266 6751 235159 25080
2 31113 SPHPP_CIB_CCD18_ProteinGrouping_curated_FDR1_protein 4038 61490 7422 230674 29359
3 31114 SPHPP_CNB_CCD18_TT__GEL_R1_PG_curated_FDR1prot 5609 104653 12536 831689 48948
4 31115 SPHPP_UV_CCD18_TT_GEL_NewS 5232 114269 10386 1496157 51100
5 31116 SPHPP_UPV_CCD18_TT_GEL_R1_curated_FDR1_protein 8268 270229 19451 768506 127921
6 31117 SPHPP_IIBB_CCD18_OT_OGEL_MASCOT_curated_FDR1_protein 2194 34102 2829 68755 12593