Project PRD000002

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Summary

Title

HUPO Plasma Proteome Project

Description

esi-quadrupole tof survey of tryptic peptides from HUPO pooled Human plasma or serum specimen: b1-serum.

Sample Processing Protocol

See details in reference(s) : 15061371 16052619 15188391 16052624 16052623 16104056 16052621 16104057 15502245

Data Processing Protocol

See details in reference(s) : 15061371 16052619 15188391 16052624 16052623 16104056 16052621 16104057 15502245

Contact

DAVE THORNEYCROFT, Sequence database group

Submission Date

01/01/2004

Publication Date

23/04/2007

Publication

    Omenn GS; International collaboration in clinical chemistry and laboratory medicine: the Human Proteome Organization (HUPO) Plasma Proteome Project., Clin Chem Lab Med, 2004 Jan, 42, 1, 1-2, PubMed: 15061371

    Li X, Gong Y, Wang Y, Wu S, Cai Y, He P, Lu Z, Ying W, Zhang Y, Jiao L, He H, Zhang Z, He F, Zhao X, Qian X; Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project., Proteomics, 2005 Aug, 5, 13, 3423-41, PubMed: 16052619

    Omenn GS; The Human Proteome Organization Plasma Proteome Project pilot phase: reference specimens, technology platform comparisons, and standardized data submissions and analyses., Proteomics, 2004 May, 4, 5, 1235-40, PubMed: 15188391

    Rai AJ, Stemmer PM, Zhang Z, Adam BL, Morgan WT, Caffrey RE, Podust VN, Patel M, Lim LY, Shipulina NV, Chan DW, Semmes OJ, Leung HC; Analysis of Human Proteome Organization Plasma Proteome Project (HUPO PPP) reference specimens using surface enhanced laser desorption/ionization-time of flight (SELDI-TOF) mass spectrometry: multi-institution correlation of spectra and identification of biomarkers., Proteomics, 2005 Aug, 5, 13, 3467-74, PubMed: 16052624

    Berhane BT, Zong C, Liem DA, Huang A, Le S, Edmondson RD, Jones RC, Qiao X, Whitelegge JP, Ping P, Vondriska TM; Cardiovascular-related proteins identified in human plasma by the HUPO Plasma Proteome Project pilot phase., Proteomics, 2005 Aug, 5, 13, 3520-30, PubMed: 16052623

    Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM; Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database., Proteomics, 2005 Aug, 5, 13, 3226-45, PubMed: 16104056

    Rai AJ, Gelfand CA, Haywood BC, Warunek DJ, Yi J, Schuchard MD, Mehigh RJ, Cockrill SL, Scott GB, Tammen H, Schulz-Knappe P, Speicher DW, Vitzthum F, Haab BB, Siest G, Chan DW; HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples., Proteomics, 2005 Aug, 5, 13, 3262-77, PubMed: 16052621

    Adamski M, Blackwell T, Menon R, Martens L, Hermjakob H, Taylor C, Omenn GS, States DJ; Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project., Proteomics, 2005 Aug, 5, 13, 3246-61, PubMed: 16104057

    Omenn GS; Advancement of biomarker discovery and validation through the HUPO plasma proteome project., Dis Markers, 2004, 20, 3, 131-4, PubMed: 15502245

Assay

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Showing 1 - 10 of 95 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
1 13 HUPO Plasma Proteome Project, Lab # 2 Expt # 17 483 2192 1423 0 0
2 65 HUPO Plasma Proteome Project, Lab # 28 Expt # 7 6071 6071 1466 0 0
3 98 HUPO Plasma Proteome Project, Lab # 55 Expt # 35 2320 4310 870 0 0
4 4 HUPO Plasma Proteome Project, Lab # 1 Expt # 36 153 665 480 0 0
5 5 HUPO Plasma Proteome Project, Lab # 1 Expt # 37 119 439 315 0 0
6 6 HUPO Plasma Proteome Project, Lab # 1 Expt # 38 147 563 433 0 0
7 8 HUPO Plasma Proteome Project, Lab # 1 Expt # 40 169 789 578 0 0
8 9 HUPO Plasma Proteome Project, Lab # 1 Expt # 41 157 679 486 0 0
9 10 HUPO Plasma Proteome Project, Lab # 1 Expt # 42 146 615 466 0 0
10 7 HUPO Plasma Proteome Project, Lab # 1 Expt # 39 62 197 126 0 0