PDBsum entry 9npy

Ribosome

PDB id: 9npy

Contents

Protein chains

221 a.a.

96 a.a.

108 a.a.

124 a.a.

140 a.a.

70 a.a.

140 a.a.

141 a.a.

100 a.a.

71 a.a.

58 a.a.

62 a.a.

55 a.a.

184 a.a.

307 a.a.

DNA/RNA

Metals

_MG ×21

_ZN ×2

__K ×9

Waters ×827

PDB id:

9npy

Name:

Ribosome

Title:

Sars-cov-2 nsp1 bound to the rhinolophus lepidus 40s ribosome (local refinement of the 40s head)

Structure:

40s ribosomal protein us3, rps3. Chain: b. 40s ribosomal protein es10, rps10. Chain: j. 40s ribosomal protein es12, rps12. Chain: l. 40s ribosomal protein us19, rps15. Chain: o. 40s ribosomal protein us9, rps16.

Source:

Rhinolophus lepidus. Organism_taxid: 188570. Organism_taxid: 188570

Authors:

R.Gen,Seattle Structural Genomics Center For Infectious Disease (Ssgcid),D.Veesler

Key ref:

R.Gen et al. (2025). Sars-Cov-2 nsp1 mediates broad inhibition of translat mammals.. Cell rep, 44, 15696. PubMed id: 40359110

Date:

11-Mar-25 Release date: 11-Jun-25

Protein chain

No UniProt id for this chain

Struc: 221 a.a.

Protein chain

No UniProt id for this chain

Struc: 96 a.a.

Protein chain

No UniProt id for this chain

Struc: 108 a.a.

Protein chain

No UniProt id for this chain

Struc: 124 a.a.

Protein chain

No UniProt id for this chain

Struc: 140 a.a.

Protein chain

No UniProt id for this chain

Struc: 70 a.a.

Protein chain

No UniProt id for this chain

Struc: 140 a.a.

Protein chain

No UniProt id for this chain

Struc: 141 a.a.

Protein chain

No UniProt id for this chain

Struc: 100 a.a.

Protein chain

No UniProt id for this chain

Struc: 71 a.a.

Protein chain

No UniProt id for this chain

Struc: 58 a.a.

Protein chain

No UniProt id for this chain

Struc: 62 a.a.

Protein chain

No UniProt id for this chain

Struc: 55 a.a.

Protein chain

No UniProt id for this chain

Struc: 184 a.a.

Protein chain

No UniProt id for this chain

Struc: 307 a.a.

DNA/RNA chain

A-G-G-G-C-A-C-C-A-C-C-A-G-G-A-G-U-G-G-A-G-C-C-PSU-G-C-G-G-C-PSU-U-A-A-U-U-PSU- ... 483 bases