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PDBsum entry 9mla
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protein ligands Protein-protein interface(s) links
Viral protein PDB id
9mla

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
360 a.a.
155 a.a.
119 a.a.
107 a.a.
Ligands
NAG-NAG-BMA-MAN-
MAN ×3
NAG-NAG ×12
NAG-NAG-BMA ×6
NAG-NAG-BMA-FUC ×3
NAG ×6
PDB id:
9mla
Name: Viral protein
Title: Pre-fusion herv-k envelope protein trimer ectodomain in complex with kenv-6 fab
Structure: Surface protein. Chain: a, b, c. Synonym: su. Engineered: yes. Mutation: yes. Other_details: phoenix consensus sequence (dewannieux, marie, et al. 2006). Engineered v437c mutation. Transmembrane protein,fibritin. Chain: d, e, f.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ervk-25. Expressed in: drosophila melanogaster. Expression_system_taxid: 7227. Expression_system_cell_line: s2. Expression_system_atcc_number: crl-1963. Homo sapiens, enterobacteria phage t4.
Authors: J.Shek,C.Sun,K.Hastie,E.O.Saphire
Key ref: J.Shek et al. Human endogenous retrovirus herv-K envelope glycoprot structures in pre- And post-Fusion conformations by c. To be published, . PubMed id: 40864726
Date:
18-Dec-24     Release date:   30-Jul-25    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P61570  (ENK25_HUMAN) -  Endogenous retrovirus group K member 25 Env polyprotein from Homo sapiens
Seq:
Struc: 		 
Seq:
Struc: 		661 a.a.
360 a.a.*
Protein chains
Pfam   ArchSchema ?
P10104  (WAC_BPT4) -  Fibritin from Enterobacteria phage T4
Seq:
Struc: 		487 a.a.
155 a.a.*
Protein chains
Pfam   ArchSchema ?
P61570  (ENK25_HUMAN) -  Endogenous retrovirus group K member 25 Env polyprotein from Homo sapiens
Seq:
Struc: 		 
Seq:
Struc: 		661 a.a.
155 a.a.*
Protein chains
No UniProt id for this chain
Struc: 119 a.a.
Protein chains
No UniProt id for this chain
Struc: 107 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 136 residue positions (black crosses)

 

 

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