PDBsum entry 9jwc

Biosynthetic protein

PDB id: 9jwc

Contents

Protein chains

386 a.a.

Ligands

OO0

PLP ×2

Waters ×489

PDB id:

9jwc

Name:

Biosynthetic protein

Title:

Three-dimensional structure of homo-dimer of cystathione beta lyase/plp/+l-alliin complex from lactobacillus delbrueckii(ldpatb)

Structure:

Cysteine-s-conjugate beta-lyase. Chain: a, b. Engineered: yes. Mutation: yes

Source:

Lactobacillus delbrueckii. Organism_taxid: 888027. Gene: ldl72_07215. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.

Resolution:

2.08Å R-factor: 0.187 R-free: 0.218

Authors:

Y.Liu,C.Yang

Key ref:

Y.Liu and c.yang Cystathionine beta-Lyase(patb)of lactobacillus lactob delbrueckii at 1.78 ?. To be published, .

Date:

10-Oct-24 Release date: 20-Nov-24

Protein chains

A0AAC9VP02  () -

Enzyme reactions

• Enzyme class: E.C.4.4.1.13 - cysteine-S-conjugate beta-lyase.
• Reaction: an S-substituted L-cysteine + H2O = a thiol + pyruvate + NH4⁺

S-substituted L-cysteine (Bound ligand (Het Group name = OO0) matches with 58.33% similarity) + H2O = thiol + pyruvate + NH4(+)

• Cofactor: Pyridoxal 5'-phosphate

Pyridoxal 5'-phosphate (Bound ligand (Het Group name = PLP) corresponds exactly)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site