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PDBsum entry 9irp

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
9irp

 

 

 

 

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Contents
Protein chains
(+ 8 more) 188 a.a.
Ligands
Z53 ×14
Metals
_MG ×12
Waters ×1963
PDB id:
9irp
Name: Hydrolase
Title: Structure of clpp from staphylococcus aureus in complex with zg297
Structure: Atp-dependent clp protease proteolytic subunit. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n. Synonym: endopeptidase clp. Engineered: yes
Source: Staphylococcus aureus. Organism_taxid: 1280. Gene: clpp_1, clpp, clpp_2, a6760_03845, bn1321_180012, cv021_05845, e1948_01285, e1948_03940, ep54_12650, eq90_03850, faf17_09860, g6w63_01780, g6y24_04455, go793_13920, go814_03290, go942_03115, gqx37_00485, gz156_04030, gz163_03895, h2639_09715, hmpref3211_00508, m1k003_1188, nctc10702_01301, nctc13131_00808, nctc5664_02933, nctc7878_03438, nctc7972_01134, qu38_10910, samea1531744_00638, samea2078260_01084, samea2078588_00822,
Resolution:
1.90Å     R-factor:   0.175     R-free:   0.208
Authors: B.Y.Wei,P.Y.Wang,T.Zhang,C.-G.Yang
Key ref: T.Zhang et al. (2024). Structure-Guided development of selective caseinolyti protease p agonists as antistaphylococcal agents.. Cell rep med, 5, 01837. PubMed id: 39615486 DOI: 10.1016/J.XCRM.2024.101837
Date:
16-Jul-24     Release date:   23-Oct-24    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q2G036  (CLPP_STAA8) -  ATP-dependent Clp protease proteolytic subunit from Staphylococcus aureus (strain NCTC 8325 / PS 47)
Seq:
Struc:
195 a.a.
188 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.3.4.21.92  - endopeptidase Clp.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Hydrolysis of proteins to small peptides in the presence of ATP and magnesium. Alpha-casein is the usual test substrate. In the absence of ATP, only oligopeptides shorter than five residues are cleaved (such as succinyl-Leu-Tyr-|-NHMEC; and Leu-Tyr-Leu-|-Tyr-Trp, in which the cleavage of the -Tyr-|-Leu- and -Tyr-|-Trp- bond also occurs).

 

 

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