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PDBsum entry 8w3d

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protein ligands Protein-protein interface(s) links
Transferase/transferase inhibitor PDB id
8w3d

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
298 a.a.
Ligands
TZ0 ×4
GOL ×4
SO4 ×9
Waters ×447
PDB id:
8w3d
Name: Transferase/transferase inhibitor
Title: Tas-120 covalent structure with fgfr2 molecular brake mutant
Structure: Fibroblast growth factor receptor 2. Chain: a, b, c, d. Synonym: fgfr-2,k-sam,kgfr,keratinocyte growth factor receptor. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: fgfr2, bek, kgfr, ksam. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
2.04Å     R-factor:   0.220     R-free:   0.250
Authors: I.D.Hoffman,K.J.Nelson,D.C.Bensen,J.B.Bailey
Key ref: L.Goyal et al. A model for decoding resistance in precision oncology acquired resistance to fgfr inhibitors in cholangiocarcinoma.. Ann oncol, . PubMed id: 39706336
Date:
22-Feb-24     Release date:   01-Jan-25    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P21802  (FGFR2_HUMAN) -  Fibroblast growth factor receptor 2 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
821 a.a.
298 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

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