PDBsum entry 8t4z

Lipid binding protein

PDB id: 8t4z

Contents

Protein chains

293 a.a.

99 a.a.

204 a.a.

239 a.a.

Ligands

NAG-NAG-BMA ×2

NAG-NAG

Y73

Waters ×26

PDB id:

8t4z

Name:

Lipid binding protein

Title:

T-cell receptor and lipid complex structure

Structure:

Antigen-presenting glycoprotein cd1d1. Chain: a. Engineered: yes. Beta-2-microglobulin. Chain: b. Engineered: yes. T cell receptor alpha variable 11, human nkt tcr alpha chain chimera. Chain: c.

Source:

Mus musculus. House mouse. Organism_taxid: 10090. Gene: cd1d1, cd1.1. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Gene: b2m. Mus musculus, homo sapiens. House mouse, human.

Resolution:

2.69Å R-factor: 0.197 R-free: 0.265

Authors:

T.Praveena,J.Rossjohn

Key ref:

T.Praveena and j.rossjohn T-Cell receptor and lipid complex structure. To be published, . PubMed id: 39141352

Date:

12-Jun-23 Release date: 07-Aug-24

Protein chain

P11609  (CD1D1_MOUSE) -  Antigen-presenting glycoprotein CD1d1 from Mus musculus

Seq: 336 a.a.

Struc: 293 a.a.*

Protein chain

P01887  (B2MG_MOUSE) -  Beta-2-microglobulin from Mus musculus

Seq: 119 a.a.

Struc: 99 a.a.

Protein chain

A0A0B4J1J9  (A0A0B4J1J9_MOUSE) -  T cell receptor alpha variable 11 (Fragment) from Mus musculus

Seq: 114 a.a.

Struc: 204 a.a.*

Protein chain

K7N5M3  (K7N5M3_HUMAN) -  Human nkt tcr alpha chain from Homo sapiens

Seq: 220 a.a.

Struc: 204 a.a.*

Protein chain

A2NTY6  (A2NTY6_MOUSE) -  Beta-chain (Fragment) from Mus musculus

Seq: 144 a.a.

Struc: 239 a.a.*

Protein chain

P0DTU4  (TRBR2_HUMAN) -  T cell receptor beta chain MC.7.G5 from Homo sapiens

Seq: 315 a.a.

Struc: 239 a.a.*

* PDB and UniProt seqs differ at 134 residue positions (black crosses)