PDBsum entry 8s1p

Ribosome

PDB id: 8s1p

Contents

Protein chains

64 a.a.

37 a.a.

46 a.a.

273 a.a.

207 a.a.

206 a.a.

178 a.a.

175 a.a.

143 a.a.

122 a.a.

146 a.a.

135 a.a.

119 a.a.

120 a.a.

113 a.a.

118 a.a.

102 a.a.

110 a.a.

91 a.a.

102 a.a.

80 a.a.

61 a.a.

65 a.a.

58 a.a.

249 a.a.

53 a.a.

49 a.a.

44 a.a.

DNA/RNA

Ligands

UNK-UNK-UNK-UNK

CLM

Metals

_ZN ×4

_MG ×158

__K ×47

Waters ×2771

PDB id:

8s1p

Name:

Ribosome

Title:

Ylmh bound to ptrna-50s

Structure:

50s ribosomal protein l35. Chain: 3. 50s ribosomal protein l36. Chain: 4. Synonym: bl38,ribosomal protein b,ribosomal protein ii. 50s ribosomal protein l31. Chain: 6. 23s rrna. Chain: a.

Source:

Bacillus subtilis subsp. Subtilis str. 168. Organism_taxid: 224308. Gene: ylmh, bsu15410. Expressed in: bacillus subtilis. Expression_system_taxid: 1423. Organism_taxid: 224308

Authors:

H.Paternoga,L.Dimitrova-Paternoga,D.N.Wilson

Key ref:

H.Takada et al. A role for the s4-Domain containing protein ylmh in ribosome-Associated quality control in bacillus subti. Nucleic acids res, . PubMed id: 38811035

Date:

15-Feb-24 Release date: 12-Jun-24

Protein chain

P55874  (RL35_BACSU) -  Large ribosomal subunit protein bL35 from Bacillus subtilis (strain 168)

Seq: 66 a.a.

Struc: 64 a.a.

Protein chain

P20278  (RL36_BACSU) -  Large ribosomal subunit protein bL36 from Bacillus subtilis (strain 168)

Seq: 37 a.a.

Struc: 37 a.a.

Protein chain

Q03223  (RL31_BACSU) -  Large ribosomal subunit protein bL31 from Bacillus subtilis (strain 168)

Seq: 66 a.a.

Struc: 46 a.a.

Protein chain

P42919  (RL2_BACSU) -  Large ribosomal subunit protein uL2 from Bacillus subtilis (strain 168)

Seq: 277 a.a.

Struc: 273 a.a.

Protein chain

P42920  (RL3_BACSU) -  Large ribosomal subunit protein uL3 from Bacillus subtilis (strain 168)

Seq: 209 a.a.

Struc: 207 a.a.

Protein chain

P42921  (RL4_BACSU) -  Large ribosomal subunit protein uL4 from Bacillus subtilis (strain 168)

Seq: 207 a.a.

Struc: 206 a.a.

Protein chain

P12877  (RL5_BACSU) -  Large ribosomal subunit protein uL5 from Bacillus subtilis (strain 168)

Seq: 179 a.a.

Struc: 178 a.a.

Protein chain

P46898  (RL6_BACSU) -  Large ribosomal subunit protein uL6 from Bacillus subtilis (strain 168)

Seq: 179 a.a.

Struc: 175 a.a.

Protein chain

P70974  (RL13_BACSU) -  Large ribosomal subunit protein uL13 from Bacillus subtilis (strain 168)

Seq: 145 a.a.

Struc: 143 a.a.

Protein chain

P12875  (RL14_BACSU) -  Large ribosomal subunit protein uL14 from Bacillus subtilis (strain 168)

Seq: 122 a.a.

Struc: 122 a.a.

Protein chain

P19946  (RL15_BACSU) -  Large ribosomal subunit protein uL15 from Bacillus subtilis (strain 168)

Seq: 146 a.a.

Struc: 146 a.a.

Protein chain

P14577  (RL16_BACSU) -  Large ribosomal subunit protein uL16 from Bacillus subtilis (strain 168)

Seq: 144 a.a.

Struc: 135 a.a.

Protein chain

P20277  (RL17_BACSU) -  Large ribosomal subunit protein bL17 from Bacillus subtilis (strain 168)

Seq: 120 a.a.

Struc: 119 a.a.

Protein chain

P46899  (RL18_BACSU) -  Large ribosomal subunit protein uL18 from Bacillus subtilis (strain 168)

Seq: 120 a.a.

Struc: 120 a.a.

Protein chain

O31742  (RL19_BACSU) -  Large ribosomal subunit protein bL19 from Bacillus subtilis (strain 168)

Seq: 115 a.a.

Struc: 113 a.a.

Protein chain

P55873  (RL20_BACSU) -  Large ribosomal subunit protein bL20 from Bacillus subtilis (strain 168)

Seq: 119 a.a.

Struc: 118 a.a.

Protein chain

P26908  (RL21_BACSU) -  Large ribosomal subunit protein bL21 from Bacillus subtilis (strain 168)

Seq: 102 a.a.

Struc: 102 a.a.

Protein chain

P42060  (RL22_BACSU) -  Large ribosomal subunit protein uL22 from Bacillus subtilis (strain 168)

Seq: 113 a.a.

Struc: 110 a.a.

Protein chain

P42924  (RL23_BACSU) -  Large ribosomal subunit protein uL23 from Bacillus subtilis (strain 168)

Seq: 95 a.a.

Struc: 91 a.a.

Protein chain

P0CI78  (RL24_BACSU) -  Large ribosomal subunit protein uL24 from Bacillus subtilis (strain 168)

Seq: 103 a.a.

Struc: 102 a.a.

Protein chain

P05657  (RL27_BACSU) -  Large ribosomal subunit protein bL27 from Bacillus subtilis (strain 168)

Seq: 94 a.a.

Struc: 80 a.a.

Protein chain

P37807  (RL28_BACSU) -  Large ribosomal subunit protein bL28 from Bacillus subtilis (strain 168)

Seq: 62 a.a.

Struc: 61 a.a.

Protein chain

P12873  (RL29_BACSU) -  Large ribosomal subunit protein uL29 from Bacillus subtilis (strain 168)

Seq: 66 a.a.

Struc: 65 a.a.

Protein chain

P19947  (RL30_BACSU) -  Large ribosomal subunit protein uL30 from Bacillus subtilis (strain 168)

Seq: 59 a.a.

Struc: 58 a.a.

Protein chain

P71020  (YLMH_BACSU) -  Ribosome-associated protein quality control protein P2 from Bacillus subtilis (strain 168)

Seq: 257 a.a.

Struc: 249 a.a.

Protein chain

O34687  (RL32_BACSU) -  Large ribosomal subunit protein bL32 from Bacillus subtilis (strain 168)

Seq: 59 a.a.

Struc: 53 a.a.

Protein chain

P56849  (RL331_BACSU) -  Large ribosomal subunit protein bL33A from Bacillus subtilis (strain 168)

Seq: 49 a.a.

Struc: 49 a.a.

Protein chain

P05647  (RL34_BACSU) -  Large ribosomal subunit protein bL34 from Bacillus subtilis (strain 168)

Seq: 44 a.a.

Struc: 44 a.a.

DNA/RNA chains

U-U-A-A-G-U-U-A-G-A-A-A-G-G-G-C-G-C-A-C-G-G-U-G-G-A-U-G-C-C-U-U-G-G-C-A-C-U-A- ... 2733 bases

U-G-G-U-G-G-C-G-A-U-A-G-C-G-A-A-G-A-G-G-U-C-A-C-A-C-C-C-G-U-U-C-C-C-A-U-A-C-C- 112 bases

G-G-G-G-C-C-U-U-A-G-C-U-C-A-G-G-G-G-A-G-A-G-C-G-C-C-U-G-C-U-C-G-C-A-G-G-A-G-G- 69 bases