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PDBsum entry 8hgm

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protein ligands Protein-protein interface(s) links
Viral protein/immune system PDB id
8hgm

 

 

 

 

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Contents
Protein chains
194 a.a.
223 a.a.
215 a.a.
Ligands
NAG-NAG
PDB id:
8hgm
Name: Viral protein/immune system
Title: Structure of sars-cov-2 spike rbd in complex with neutralizing antibody niv-11
Structure: Spike glycoprotein. Chain: b. Engineered: yes. Mutation: yes. Niv-11 fab heavy chain. Chain: c. Engineered: yes. Niv-11 fab light chain. Chain: d.
Source: Severe acute respiratory syndrome coronavirus 2. 2019-ncov,sars-cov-2. Organism_taxid: 2697049. Expressed in: homo sapiens. Expression_system_taxid: 9606. Homo sapiens. Organism_taxid: 9606. Expression_system_taxid: 9606
Authors: S.Moriyama,Y.Anraku,S.Muranishi,Y.Adachi,D.Kuroda,Y.Higuchi,R.Kotaki, K.Tonouchi,K.Yumoto,T.Suzuki,S.Kita,T.Someya,H.Fukuhara,Y.Kuroda, T.Yamamoto,T.Onodera,S.Fukushi,K.Maeda,F.Nakamura-Uchiyama, T.Hashiguchi,A.Hoshino,K.Maenaka,Y.Takahashi
Key ref: S.Moriyama et al. (2023). Structural delineation and computational design of sars-Cov-2-Neutralizing antibodies against omicron subvariants.. Nat commun, 14, 4198. PubMed id: 37452031
Date:
15-Nov-22     Release date:   25-Oct-23    
PROCHECK
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 Headers
 References

Protein chain
P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1273 a.a.
194 a.a.
Protein chain
No UniProt id for this chain
Struc: 223 a.a.
Protein chain
No UniProt id for this chain
Struc: 215 a.a.
Key:    PfamA domain  Secondary structure

 

 

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