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PDBsum entry 8g6h
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protein dna_rna Protein-protein interface(s) links
DNA binding protein/DNA PDB id
8g6h

 

 

 

 

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Contents
Protein chains
97 a.a.
83 a.a.
103 a.a.
95 a.a.
78 a.a.
73 a.a.
DNA/RNA
PDB id:
8g6h
Name: DNA binding protein/DNA
Title: H2bk120ub+h3k79me2-modified nucleosome ubiquitin position 6
Structure: Histone h3. Chain: a, e. Engineered: yes. Mutation: yes. Histone h4. Chain: b, f. Engineered: yes. Histone h2a. Chain: c, g.
Source: Xenopus laevis. African clawed frog. Organism_taxid: 8355. Gene: loc121398065. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: hist1h2aj, loc494591, xelaev_18003602mg. Synthetic construct. Organism_taxid: 32630.
Authors: C.W.Hicks,C.Wolberger,M.Keogh
Key ref: C.W.Hicks et al. Ubiquitinated h2b as gatekeeper of the nucleosome aci patch. To be published, . PubMed id: 39149911
Date:
15-Feb-23     Release date:   21-Feb-24    
PROCHECK
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 Headers
 References

Protein chains
P84233  (H32_XENLA) -  Histone H3.2 from Xenopus laevis
Seq:
Struc: 		136 a.a.
97 a.a.*
Protein chain
P62799  (H4_XENLA) -  Histone H4 from Xenopus laevis
Seq:
Struc: 		103 a.a.
83 a.a.
Protein chains
P06897  (H2A1_XENLA) -  Histone H2A type 1 from Xenopus laevis
Seq:
Struc: 		130 a.a.
103 a.a.*
Protein chains
P02281  (H2B11_XENLA) -  Histone H2B 1.1 from Xenopus laevis
Seq:
Struc: 		126 a.a.
95 a.a.*
Protein chain
P62799  (H4_XENLA) -  Histone H4 from Xenopus laevis
Seq:
Struc: 		103 a.a.
78 a.a.
Protein chain
P0CG47  (UBB_HUMAN) -  Polyubiquitin-B from Homo sapiens
Seq:
Struc: 		229 a.a.
73 a.a.
Key:    Secondary structure
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

DNA/RNA chains
  C-C-G-C-C-C-A-T-C-A-G-A-A-T-C-C-C-G-G-T-G-C-C-G-A-G-G-C-C-G-C-T-C-A-A-T-T-G-G- 157 bases
  C-C-G-G-C-A-A-T-C-G-A-T-G-T-A-T-A-T-A-T-C-T-G-A-C-A-C-G-T-G-C-C-T-G-G-A-G-A-C- 157 bases

 

 

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