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PDBsum entry 8fv4

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protein ligands metals Protein-protein interface(s) links
Transferase PDB id
8fv4

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
291 a.a.
Ligands
YAA
ANP ×2
Metals
_MG ×2
Waters ×197
PDB id:
8fv4
Name: Transferase
Title: Egfr(t790m/v948r) in complex with compound 2 (ln5993)
Structure: Epidermal growth factor receptor. Chain: d, a, b, c. Synonym: proto-oncogenE C-erbb-1,receptor tyrosine-protein kinase erbb-1. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: egfr, erbb, erbb1, her1. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.20Å     R-factor:   0.204     R-free:   0.261
Authors: B.C.Ogboo,T.S.Beyett,M.J.Eck,D.E.Heppner
Key ref: B.C.Ogboo et al. Egfr(t790m/V948r) in complex with compound 2 (ln5993). To be published, . PubMed id: 38378740
Date:
18-Jan-23     Release date:   17-Jan-24    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00533  (EGFR_HUMAN) -  Epidermal growth factor receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1210 a.a.
291 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
Bound ligand (Het Group name = ANP)
matches with 81.25% similarity
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

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