PDBsum entry 8ekd

Immune system

PDB id: 8ekd

Contents

Protein chains

126 a.a.

111 a.a.

174 a.a.

Ligands

NAG

PDB id:

8ekd

Name:

Immune system

Title:

Cryo-em map of sars-cov-2 omicron ba.2 spike in complex with 2130-1- 0114-112

Structure:

Fab llnl-199 hc. Chain: e. Engineered: yes. Fab llnl-199 lc. Chain: f. Engineered: yes. Spike protein s2'. Chain: g. Fragment: receptor-binding domain (rbd).

Source:

Homo sapiens. Human. Organism_taxid: 9606. Expressed in: homo sapiens. Expression_system_taxid: 9606. Severe acute respiratory syndrome coronavirus. Organism_taxid: 2901879. Gene: s, 2. Expression_system_taxid: 9606

Authors:

E.Binshtein,J.E.Crowe

Key ref:

E.Binshtein and j.e.crowe Cryo-Em map of sars-Cov-2 omicron ba.2 spike in compl llnl-199. To be published, . PubMed id: 38720086

Date:

20-Sep-22 Release date: 21-Feb-24

Protein chain

No UniProt id for this chain

Struc: 126 a.a.

Protein chain

No UniProt id for this chain

Struc: 111 a.a.

Protein chain

P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2

Seq: 1273 a.a.

Struc: 174 a.a.*

* PDB and UniProt seqs differ at 16 residue positions (black crosses)