PDBsum entry 8edf

Immune system

PDB id: 8edf

Contents

Protein chains

212 a.a.

263 a.a.

196 a.a.

Ligands

NAG

PDB id:

8edf

Name:

Immune system

Title:

Bovine fab skd in complex with sars cov-2 receptor binding domain

Structure:

Skd fab light chain. Chain: l. Engineered: yes. Skd fab heavy chain. Chain: h. Engineered: yes. Spike protein s1. Chain: a. Engineered: yes

Source:

Bos taurus. Cattle. Organism_taxid: 9913. Expressed in: homo sapiens. Expression_system_taxid: 9606. Bos taurus, homo sapiens. Cattle, human. Organism_taxid: 9913, 9606. Severe acute respiratory syndrome coronavirus

Resolution:

3.40Å R-factor: 0.277 R-free: 0.299

Authors:

R.L.Stanfield,I.A.Wilson

Key ref:

R.Huang and r.l.stanfield Bovine FAB skd in complex with sars cov-2 receptor bi domain. To be published, . PubMed id: 37722054

Date:

04-Sep-22 Release date: 20-Sep-23

Protein chain

P0DOY2  (IGLC2_HUMAN) -  Immunoglobulin lambda constant 2 from Homo sapiens

Seq: 106 a.a.

Struc: 212 a.a.

Protein chain

P0DOX5  (IGG1_HUMAN) -  Immunoglobulin gamma-1 heavy chain from Homo sapiens

Seq: 449 a.a.

Struc: 263 a.a.*

Protein chain

P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2

Seq: 1273 a.a.

Struc: 196 a.a.*

* PDB and UniProt seqs differ at 118 residue positions (black crosses)