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PDBsum entry 8c1v
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protein ligands Protein-protein interface(s) links
Viral protein PDB id
8c1v

 

 

 

 

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Contents
Protein chains
1006 a.a.
60 a.a.
Ligands
NAG-NAG ×6
NAG ×39
PDB id:
8c1v
Name: Viral protein
Title: Sars-cov-2 s-trimer (3 rbds up) bound to trisb92, fitted into cryo-em map
Structure: Spike glycoprotein. Chain: a, c, b. Synonym: s glycoprotein,e2,peplomer protein. Engineered: yes. Sb92. Chain: d, e, f. Engineered: yes
Source: Severe acute respiratory syndrome coronavirus 2. Organism_taxid: 2697049. Gene: s, 2. Expressed in: homo sapiens. Expression_system_taxid: 9606. Homo sapiens. Organism_taxid: 9606. Expressed in: escherichia coli.
Authors: J.T.Huiskonen,I.Rissanen,L.Hannula
Key ref: A.R.Makela et al. (2023). Intranasal trimeric sherpabody inhibits sars-Cov-2 in recent immunoevasive omicron subvariants.. Nat commun, 14, 1637. PubMed id: 36964125
Date:
21-Dec-22     Release date:   19-Apr-23    
PROCHECK
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 Headers
 References

Protein chains
P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2
Seq:
Struc: 		 
Seq:
Struc: 		 
Seq:
Struc: 		1273 a.a.
1006 a.a.*
Protein chains
No UniProt id for this chain
Struc: 60 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 

 

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