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PDBsum entry 7kpm

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protein ligands links
Transferase PDB id
7kpm

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
255 a.a.
Ligands
ADP
Waters ×254
PDB id:
7kpm
Name: Transferase
Title: Crystal structure of hephb1 bound with adp
Structure: Ephrin type-b receptor 1. Chain: a. Synonym: elk,eph tyrosine kinase 2,eph-like kinase 6,hek6,neuronally- expressed eph-related tyrosine kinase,net,tyrosine-protein kinase receptor eph-2. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ephb1, elk, epht2, hek6, net. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.61Å     R-factor:   0.169     R-free:   0.197
Authors: M.Ahmed,P.Wang,H.Sadek
Key ref: m.ahmed et al. (2021). Identification of tetracycline combinations as EphB1 tyrosine kinase inhibitors for treatment of neuropathic pain. Proc.Natl.Acad.Sci.USA, 118, . PubMed id: 33627480
Date:
11-Nov-20     Release date:   10-Mar-21    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P54762  (EPHB1_HUMAN) -  Ephrin type-B receptor 1 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
984 a.a.
255 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
Bound ligand (Het Group name = ADP)
corresponds exactly
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
Proc.Natl.Acad.Sci.USA 118: (2021)
PubMed id: 33627480  
 
 
Identification of tetracycline combinations as EphB1 tyrosine kinase inhibitors for treatment of neuropathic pain.
m.ahmed, p.wang, y.nakada, i.menendez-montes, m.ismail, m.henkemeyer, h.sadek, e.kandil.
 
  ABSTRACT  
 
No abstract given.

 

 

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