PDBsum entry 7jim

DNA

PDB id: 7jim

Contents

DNA/RNA

Ligands

CAC ×2

PDB id:

7jim

Name:

DNA

Title:

Self-assembly of a 3d DNA crystal lattice (4x6 scramble junction version) containing the j26 immobile holliday junction with r3 symmetry

Structure:

DNA (5'-d( Gp Ap Ap Cp Gp Ap Cp Ap Tp Tp Gp A)-3'). Chain: a. Engineered: yes. DNA (5'-d(p Cp Gp Ap Cp Gp Ap Cp Tp C)-3'). Chain: b. Engineered: yes. DNA (5'-d(p Tp Cp Ap Tp Cp G)-3'). Chain: c. Engineered: yes.

Source:

Synthetic: yes. Synthetic construct. Organism_taxid: 32630. Organism_taxid: 32630

Resolution:

3.02Å R-factor: 0.229 R-free: 0.261

Authors:

C.R.Simmons,T.Macculloch,N.Stephanopoulos,H.Yan

Key ref:

C.R.Simmons et al. (2022). The influence of holliday junction sequence and dynam DNA crystal self-Assembly.. Nat commun, 13, 3112. PubMed id: 35662248

Date:

23-Jul-20 Release date: 14-Jul-21

DNA/RNA chains

G-A-A-C-G-A-C-A-T-T-G-A 12 bases

C-G-A-C-G-A-C-T-C 9 bases

T-C-A-T-C-G 6 bases

T-C-G-A-G-T-C-A-G-T-G-T-C-G-T 15 bases