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PDBsum entry 7ekd
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Biosynthetic protein
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PDB id
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7ekd
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PDB id:
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| Name: |
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Biosynthetic protein
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Title:
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Crystal structure of gibberellin 3-oxidase 2 (ga3ox2) in rice
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Structure:
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Gibberellin 3-beta-dioxygenase 2. Chain: a. Synonym: ga 3-oxidase 2,osga3ox2,gibberellin 3 beta-hydroxylase 2, protein dwarf18. Engineered: yes
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Source:
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Oryza sativa subsp. Japonica. Rice. Organism_taxid: 39947. Gene: ga3ox2, d18, os01g0177400, loc_os01g08220, osj_00594, p0013f10.29. Expressed in: escherichia coli. Expression_system_taxid: 562
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Resolution:
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1.90Å
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R-factor:
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0.166
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R-free:
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0.212
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Authors:
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S.Takehara,K.Kawai,B.Mikami,M.Ueguchi-Tanaka
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Key ref:
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K.Kawai
et al.
(2022).
Evolutionary alterations in gene expression and enzym activities of gibberellin 3-Oxidase 1 in oryza..
Commun biol,
5,
67.
PubMed id:
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Date:
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05-Apr-21
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Release date:
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16-Feb-22
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PROCHECK
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Headers
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References
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Q9FU53
(G3OX2_ORYSJ) -
Gibberellin 3-beta-dioxygenase 2 from Oryza sativa subsp. japonica
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Seq:
Struc:
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373 a.a.
343 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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Enzyme class:
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E.C.1.14.11.15
- gibberellin 3beta-dioxygenase.
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Pathway:
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Diterpenoid biosynthesis
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Reaction:
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gibberellin A20 + 2-oxoglutarate + O2 = gibberellin A1 + succinate + CO2
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gibberellin A20
Bound ligand (Het Group name = )
corresponds exactly
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+
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2-oxoglutarate
Bound ligand (Het Group name = )
matches with 95.83% similarity
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+
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O2
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=
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gibberellin A1
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+
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succinate
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+
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CO2
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Cofactor:
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Fe(2+); L-ascorbate
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Fe(2+)
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L-ascorbate
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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Links
