spacer
spacer

PDBsum entry 6wl6

Go to PDB code: 
protein ligands Protein-protein interface(s) links
Transferase/inhibitor PDB id
6wl6

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chains
289 a.a.
Ligands
91A ×2
Waters ×192
PDB id:
6wl6
Name: Transferase/inhibitor
Title: Cocomplex structure of deoxyhypusine synthase with inhibitor 6-[(2r)- 1-amino-4-methylpentan-2-yl]-3-(pyridin-3-yl)-4h,5h,6h,7h-thieno[2,3- c]pyridin-7-one
Structure: Deoxyhypusine synthase. Chain: a, b. Synonym: dhs. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: dhps, ds. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
2.12Å     R-factor:   0.180     R-free:   0.194
Authors: M.G.Klein,G.Ambrus-Aikelin
Key ref: Y.Tanaka et al. New series of potent allosteric inhibitors of deoxyhy synthase. Acs med chem lett, . PubMed id: 34345355
Date:
18-Apr-20     Release date:   19-Aug-20    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P49366  (DHYS_HUMAN) -  Deoxyhypusine synthase from Homo sapiens
Seq:
Struc:
369 a.a.
289 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.2.5.1.46  - deoxyhypusine synthase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
EC 2.5.1.46
      Reaction: [eIF5A protein]-L-lysine + spermidine = [eIF5A protein]-deoxyhypusine + propane-1,3-diamine
[eIF5A protein]-L-lysine
+ spermidine
= [eIF5A protein]-deoxyhypusine
+ propane-1,3-diamine
      Cofactor: NAD(+)
NAD(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

spacer

spacer