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PDBsum entry 6pyh

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protein Protein-protein interface(s) links
Signaling protein/hormone PDB id
6pyh

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
793 a.a.
57 a.a.
798 a.a.
PDB id:
6pyh
Name: Signaling protein/hormone
Title: Cryo-em structure of full-length igf1r-igf1 complex. Only the extracellular region of the complex is resolved.
Structure: Insulin-like growth factor 1 receptor. Chain: a, d. Synonym: insulin-like growth factor i receptor,igf-i receptor. Engineered: yes. Insulin-like growth factor i. Chain: b. Synonym: igf-i,mechano growth factor,mgf,somatomedin-c. Engineered: yes
Source: Mus musculus. Mouse. Organism_taxid: 10090. Gene: igf1r. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293. Homo sapiens. Human.
Authors: J.Li,E.Choi,H.T.Yu,X.C.Bai
Key ref: J.Li et al. (2019). Structural basis of the activation of type 1 insulin-like growth factor receptor. Nat Commun, 10, 4567. PubMed id: 31594955 DOI: 10.1038/s41467-019-12564-0
Date:
29-Jul-19     Release date:   23-Oct-19    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q60751  (IGF1R_MOUSE) -  Insulin-like growth factor 1 receptor from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1373 a.a.
793 a.a.
Protein chain
Pfam   ArchSchema ?
P05019  (IGF1_HUMAN) -  Insulin-like growth factor 1 from Homo sapiens
Seq:
Struc:
195 a.a.
57 a.a.
Protein chain
Pfam   ArchSchema ?
Q60751  (IGF1R_MOUSE) -  Insulin-like growth factor 1 receptor from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1373 a.a.
798 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: Chains A, D: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1038/s41467-019-12564-0 Nat Commun 10:4567 (2019)
PubMed id: 31594955  
 
 
Structural basis of the activation of type 1 insulin-like growth factor receptor.
J.Li, E.Choi, H.Yu, X.C.Bai.
 
  ABSTRACT  
 
Type 1 insulin-like growth factor receptor (IGF1R) is a receptor tyrosine kinase that regulates cell growth and proliferation, and can be activated by IGF1, IGF2, and insulin. Here, we report the cryo-EM structure of full-length IGF1R-IGF1 complex in the active state. This structure reveals that only one IGF1 molecule binds the Γ-shaped asymmetric IGF1R dimer. The IGF1-binding site is formed by the L1 and CR domains of one IGF1R protomer and the α-CT and FnIII-1 domains of the other. The liganded α-CT forms a rigid beam-like structure with the unliganded α-CT, which hinders the conformational change of the unliganded α-CT required for binding of a second IGF1 molecule. We further identify an L1-FnIII-2 interaction that mediates the dimerization of membrane-proximal domains of IGF1R. This interaction is required for optimal receptor activation. Our study identifies a source of the negative cooperativity in IGF1 binding to IGF1R and reveals the structural basis of IGF1R activation.
 

 

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