PDBsum entry 6c7x

Lyase/inhibitor

PDB id: 6c7x

Contents

Protein chain

259 a.a.

Ligands

EO7

Metals

_NA

_ZN

Waters ×289

PDB id:

6c7x

Name:

Lyase/inhibitor

Title:

Carbonic anhydrase 2 in complex with 2-chloro-5'-o-sulfamoyladenosine

Structure:

Carbonic anhydrase 2. Chain: a. Synonym: carbonate dehydratase ii,carbonic anhydrasE C,cac,carbonic anhydrase ii,ca-ii. Engineered: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: ca2. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693.

Resolution:

1.50Å R-factor: 0.155 R-free: 0.188

Authors:

T.S.Peat,P.Mujumdar,S.A.Poulsen

Key ref:

P.Mujumdar et al. (2018). Synthesis, structure and bioactivity of primary sulfamate-containing natural products. Bioorg Med Chem Lett, 28, 3009-3013. PubMed id: 29685656 DOI: 10.1016/j.bmcl.2018.04.038

Date:

23-Jan-18 Release date: 23-May-18

Protein chain

P00918  (CAH2_HUMAN) -  Carbonic anhydrase 2 from Homo sapiens

Seq: 260 a.a.

Struc: 259 a.a.

Enzyme reactions

• Enzyme class: E.C.4.2.1.1 - carbonic anhydrase.
• Reaction: hydrogencarbonate + H⁺ = CO2 + H2O
• Cofactor: Zn(2+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

Added reference

DOI no: 10.1016/j.bmcl.2018.04.038

Bioorg Med Chem Lett 28:3009-3013 (2018)

PubMed id: 29685656

Synthesis, structure and bioactivity of primary sulfamate-containing natural products.

P.Mujumdar, S.Bua, C.T.Supuran, T.S.Peat, S.A.Poulsen.

ABSTRACT

Here we report the synthesis of natural products (NPs) 5'-O-sulfamoyl adenosine 1 and 5'-O-sulfamoyl-2-chloroadenosine 2. As primary sulfamates these compounds represent an uncommon class of NPs, furthermore there are few NPs known that contain a NS bond. Compounds 1 and 2 were evaluated for inhibition of carbonic anhydrases (CA), a metalloenzyme family where the primary sulfamate is known to coordinate to the active site zinc and form key hydrogen bonds with adjacent CA active site residues. Both NPs were good to moderate CA inhibitors, with compound 2 a 20-50-fold stronger CA inhibitor (K_i values 65-234 nM) than compound 1. The protein X-ray crystal structures of 1 and 2 in complex with CA II show that it is not the halogen-hydrophobic interactions that give compound 2 a greater binding energy but a slight movement in orientation of the ribose ring that allows better hydrogen bonds to CA residues. Compounds 1 and 2 were further investigated for antimicrobial activity against a panel of microbes relevant to human health, including Gram-negative bacteria (4 strains), Gram-positive bacteria (1 strain) and yeast (2 strains). Antimicrobial activity and selectivity was observed. The minimum inhibitory concentration (MIC) of NP 1 was 10 µM against Gram-positive Staphylococcus aureus and NP 2 was 5 µM against Gram-negative Escherichia coli. This is the first time that NP primary sulfamates have been assessed for inhibition and binding to CAs, with systematic antimicrobial activity studies also reported.