spacer
spacer

PDBsum entry 5skh

Go to PDB code: 
protein ligands metals Protein-protein interface(s) links
Hydrolase/hydrolase inhibitor PDB id
5skh

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chains
313 a.a.
Ligands
KFO ×4
GOL
Metals
_ZN ×4
_MG ×4
_CL
_PR ×8
Waters ×584
PDB id:
5skh
Name: Hydrolase/hydrolase inhibitor
Title: Crystal structure of human phosphodiesterase 10 in complex with c1=cn(n=c(c1=o)c2ccnn2c3cc(ccc3)f)c4cc(ccc4)oc(f)(f)f, micromolar ic50=0.043256
Structure: Camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase 10a. Chain: a, b, c, d. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pde10a. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
2.10Å     R-factor:   0.196     R-free:   0.237
Authors: C.Joseph,J.Benz,A.Flohr,M.Rogers-Evans,M.G.Rudolph
Key ref: A.Flohr et al. Crystal structure of a human phosphodiesterase 10 com. To be published, .
Date:
01-Feb-22     Release date:   12-Oct-22    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9Y233  (PDE10_HUMAN) -  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1055 a.a.
313 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.1.4.17  - 3',5'-cyclic-nucleotide phosphodiesterase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: a nucleoside 3',5'-cyclic phosphate + H2O = a nucleoside 5'-phosphate + H+
nucleoside 3',5'-cyclic phosphate
Bound ligand (Het Group name = GOL)
matches with 46.15% similarity
+ H2O
= nucleoside 5'-phosphate
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

spacer

spacer