PDBsum entry 5e5d

Hydrolase

PDB id: 5e5d

Contents

Protein chain

170 a.a.

Metals

_CD ×3

Waters ×116

PDB id:

5e5d

Name:

Hydrolase

Title:

Native structure of xoo1075, a peptide deformylase from xanthomonas oryzae pv. Oryzae

Structure:

Peptide deformylase. Chain: a. Synonym: pdf,polypeptide deformylase. Engineered: yes

Source:

Xanthomonas oryzae pv. Oryzae kacc10331. Organism_taxid: 291331. Strain: kacc10331. Gene: def, xoo1075. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

2.60Å R-factor: 0.190 R-free: 0.240

Authors:

H.P.T.Ngo,L.W.Kang

Key ref:

H.P.T.Ngo and l.w.kang Native structure of xoo1075, A peptide deformylase fr xanthomonas oryzae pv. Oryzae. To be published, .

Date:

08-Oct-15 Release date: 12-Oct-16

Supersedes:

3dld

Protein chain

Q5H3Z2  (Q5H3Z2_XANOR) -  Peptide deformylase from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)

Seq: 212 a.a.

Struc: 170 a.a.

Enzyme reactions

• Enzyme class: E.C.3.5.1.88 - peptide deformylase.
• Reaction: N-terminal N-formyl-L-methionyl-[peptide] + H2O = N-terminal L-methionyl- [peptide] + formate
• Cofactor: Fe(2+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site