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PDBsum entry 5ccn

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protein ligands metals links
Isomerase PDB id
5ccn

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
164 a.a.
Ligands
FMT
PG4
PGE
PEG
4ZZ
Metals
__K
Waters ×123
PDB id:
5ccn
Name: Isomerase
Title: Human cyclophilin d complexed with inhibitor
Structure: Peptidyl-prolyl cis-trans isomerase f, mitochondrial. Chain: a. Synonym: ppiase f,cyclophilin d,cypd,cyclophilin f,mitochondrial cyclophilin,cyp-m,rotamase f. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ppif, cyp3. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
Resolution:
1.80Å     R-factor:   0.180     R-free:   0.207
Authors: R.P.Gibson,E.Shore,N.Kershaw,M.Awais,A.Javed,D.Latawiec, S.Pandalaneni,L.Wen,N.Berry,P.O'Neill,R.Sutton,L.Y.Lian
Key ref: R.P.Gibson et al. Human cyclophilin d complexed with inhibitor. To be published, .
Date:
02-Jul-15     Release date:   20-Jul-16    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P30405  (PPIF_HUMAN) -  Peptidyl-prolyl cis-trans isomerase F, mitochondrial from Homo sapiens
Seq:
Struc:
207 a.a.
164 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.5.2.1.8  - peptidylprolyl isomerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: [protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)
Peptidylproline (omega=180)
= peptidylproline (omega=0)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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